研究成果

研究成果

Research articles/Reviews

A01班

Fumihiro Sassa, Gokul Chandra Biswas, and Hiroaki Suzuki “Microfabricated electrochemical sensing devices” Lab on a Chip, 20(8) 1358-1389, 2020.02, doi: 10.1039/C9L01112A

Mitsuru Yasuda, Norio Takeshita, and Shinsuke Shigeto “Inhomogeneous Molecular Distributions and Cytochrome Types and Redox States in Fungal Cells Revealed by Raman Hyperspectral Imaging Using Multivariate Curve Resolution-Alternating Least Squares” Analytical Chemistry, 91(19) 12501-12508, 2019.10, doi: 10.1021/acs.analchem.9b03261

Ami Matsuda, Naoko Sakaguchi, and Shinsuke Shigeto “Can cells maintain their bioactivity in ionic liquids? A novel single‐cell assessment by Raman microspectroscopy” Journal of Raman Spectroscopy, 50(-) 768-777, 2019.06, doi: 10.1002/jrs.5579

Yutaka Yawata, Tatsunori Kiyokawa, Yuhki Kawamura, Tomohiro Hirayama, Kyosuke Takabe, Nobuhiko Nomura “Intra- and Interspecies Variability of Single-Cell Innate Fluorescence Signature of Microbial Cell” Applied and Environmental Microbiology, 85(18)  e00608-19, 2019.09, doi: 10.1128/AEM.00608-19

Tatsuki Kunoh, Kana Morinaga, Shinya Sugimoto, Shun Miyazaki, Masanori Toyofuku, Kenji Iwasaki, Nobuhiko Nomura, Andrew S. Utada “Polyfunctional nanofibril appendages mediate attachment, filamentation, and filament adaptability in Leptothrix cholodniiACS Nano,  14(5) 5288-5297, 2019.12, doi: 10.1021/acsnano.9b04663

Yousuke Kikuchi, Nozomu Obana, Masanori Toyofuku, Noriyuki Kodera, Takamitsu Soma, Toshio Ando, Yoshihiro Fukumori, Nobuhiko Nomura, Azuma Taoka “Diversity of physical properties of bacterial extracellular membrane vesicles revealed through atomic force microscopy phase imaging” Nanoscale, 12(14) 7950-7959, doi: 10.1039/C9NR10850E

Hideyuki Tamaki “Cultivation Renaissance in the Post-Metagenomics Era: Combining the New and Old” Microbes and Environments, 34(2) 117-120, 2019.06, doi: 10.1264/jsme2.ME3402rh

Kyota Mitsuyama, Takeaki Tezuka, Yasuo Ohnishi “Identification and Characterization of a Cell Wall Hydrolase for Sporangiospore Maturation in Actinoplanes missouriensisJournal of Bacteriology, 201(24) e00519-19, 2019.09, doi: 10.1128/JB.00519-19

Takeaki Tezuka, Daisuke Nakane, Tomohiro Kimura, Yasuo Ohnishi “Preparation of Actinoplanes missouriensis Zoospores and Assay for Their Adherence to Solid Surfaces” Bio-protocol, 9(24) e3458, 2019.12, doi: 10.21769/BioProtoc.3458

Yuichiro Hashiguchi, Takeaki Tezuka, Yasuo Ohnishi “Involvement of three FliA-family sigma factors in the sporangium formation, spore dormancy and sporangium dehiscence in Actinoplanes missouriensisMolecular Microbiology, 113(6) 1170-1188, 2020.02, doi: 10.1111/mmi.14485

Bungonsiri Intra, Watanalai Panbangred, Yuki Inahashi, Akira Také, Mihoko Mori, Satoshi Ōmura, Atsuko MatsumotoMicromonospora pelagivivens sp. nov., a new species of the genus Micromonospora isolated from deep-sea sediment in Japan” International Journal of Systematic and Evolutionary Microbiology, 70(5) 3069-3075, 2020.03, doi: 10.1099/ijsem.0.004136

A02班

Felipe Vejarano, Chiho Suzuki-Minakuchi, Yoshiyuki Ohtsubo, Masataka Tsuda, Kazunori Okada, Hideaki Nojiri “Complete genome sequence of Thalassococcus sp. strain S3, a marine Roseobacter clade member capable of degrading carbazole” Microbiology Resource Announcements, 8(28) e00231-19, 2019.07, doi: 10.1128/MRA.00231-19

Enock Mpofu, Joydeep Chakraborty, Chiho Suzuki-Minakuchi, Kazunori Okada, Toshiaki Kimura, Hideaki Nojiri “Biotransformation of monocyclic phenolic compounds by Bacillus licheniformis TAB7″ Microorganisms, 8(1) E26, 2019.12, doi: 10.3390/microorganisms8010026

Yuna Miyoshi,Jo Okada, Tmotaka Urata, Masaki Shintani, Kazuhide Kimbara “A rotational slurry bioreactor accelerates biodegradation of A-fuel in oil-contaminated soil even under low temperature conditions” Microorganisms, 8(2) E291, 2020.02, doi: 10.3390/microorganisms8020291

Shunsuke Masuo, Yusuke Tsuda, Tomohito Namai, Hajime Minakawa, Ryosuke Shigemoto, Naoki Takaya “Enzymatic Cascade in Pseudomonas that Produces Pyrazine from α-Amino Acids” ChemBioChem, 21(3) 353-359, 2019.11, doi: 10.1002/cbic.201900448

Hiroshi Kanazawa, Sayoko Ozaki, Yuki Doi, Shunsuke Masuo, Naoki Takaya “Symbiotic riboflavin degradation by Microbacterium and Nocardioides bacteria” Bioscience Biotechnology and Biochemistry, 84(5) 1056-1061, 2020.01, doi: 10.1080/09168451.2020.1715783

Motomu Matsui and Wataru Iwasaki “Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction” Systematic Biology, 69(2) 265-279, 2019.08, doi: 10.1093/sysbio/syz049

Nattakorn Kuncharoen, Takuji Kudo, Masahiro Yuki, Moriya Ohkuma, Auttaporn Booncharoen, Somboon Tanasupawat “Micromonospora musae sp. nov., an endophytic actinomycete isolated from roots of Musa species” Systematic and Applied Microbiology, 42(6) 126060, 2019.11, doi: 10.1016/j.syapm.2019.126020

Nattaporn Klykleung, Masahiro Yuki, Takuji Kudo, Moriya Ohkuma, Wongsakorn Phongsopitanun, Pattama Pittayakhajonwut, Somboon Tanasupawat “Nonomuraea phyllanthi sp. nov., an endophytic actinomycete isolated from the leaf of Phyllanthus amarusArchives of Microbiology, 202(1) 55-61, 2020.01, doi: 10.1007/s00203-019-01717-w

Pawina Kanchanasin, Masahiro Yuki, Takuji Kudo, Moriya Ohkuma, Nattakorn Kuncharoen, Wongsakorn Phongsopitanun, Somboon Tanasupawat “Streptomyces bauhiniae sp. nov., isolated from tree bark of Bauhinia variegata Linn. in Thailand” International Journal of Systematic and Evolutionary Microbiology, 70(1) 228-233, 2020.01, doi: 10.1099/ijsem.0.003743

Mitsuo Sakamoto, Nao Ikeyama, Yusuke Ogata, Wataru Suda, Takao Iino, Masahira Hattori, ​Moriya OhkumaAlistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.” International Journal of Systematic and Evolutionary Microbiology, 70(1) 473-480, 2020.01, doi: 10.1099/ijsem.0.003778

Mitsuo Sakamoto, Nao Ikeyama, Atsushi Toyoda, Takumi Murakami, Hiroshi Mori, Takao Iino, Moriya OhkumaDialister hominis sp. nov., isolated from human faeces” International Journal of Systematic and Evolutionary Microbiology, 70(1) 589-596, 2020.01, doi: 10.1099/ijsem.0.003797

Yoshiaki Maejima, Takao Iino, Yusuke Muraguchi, Kohei Fukuda, Moriya Ohkuma, Tomohiro Suzuki, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Masaki Shintani “Chryseotalea sanarue gen. nov., sp. nov., a member of the family Cytophagaceae, isolated from a brackish lake in Hamamatsu Japan” Current Microbiology, 77(2) 306-312, 2020.02, doi: 10.1007/s00284-019-01823-4

Nattaporn Klykleung, Masahiro Yuki, Takuji Kudo,  Moriya Ohkuma, Wongsakorn Phongsopitanun, Pattama Pittayakhajonwut, Somboon Tanasupawat “Microbispora catharanthi sp. nov., a novel endophytic actinomycete isolated from the root of Catharanthus roseusInternational Journal of Systematic and Evolutionary Microbiology, 70(2) 964-970, 2020.02, doi: 10.1099/ijsem.0.003858

Takao Iino, Shigeru Kawai, Masahiro Yuki, Itaru Dekio, Moriya Ohkuma, Shin Haruta “Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring” International Journal of Systematic and Evolutionary Microbiology, 70(2) 1117-1121, 2020.02, doi: 10.1099/ijsem.0.003888

Yusuke Ogata, Mitsuo Sakamoto, Moriya Ohkuma, Masahira Hattori, Wataru Suda “Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male” Microbiology Resource Announcements, 9(7) e01543-19, 2020.02, doi: 10.1128/MRA.01543-19

Shingo Kato, Miho Hirai, Moriya Ohkuma, Katsuhiko Suzuki “Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics” PLoS ONE, 14(11) e0224888, 2019.11, doi: 10.1371/journal.pone.0224888

Shingo Kato, Takashi Itoh, Masahiro Yuki, Mai Nagamori, Masafumi Ohnishi, Katsuyuki Uematsu, Katsuhiko Suzuki, Tomonori Takashina, Moriya Ohkuma “Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring” The ISME Journal, 13(10) 2465-2474, 2019.10, doi: 10.1038/s41396-019-0447-3

Nattakorn Kuncharoen, Takuji Kudo, Masahiro Yuki, Moriya Ohkuma, Pattama Pittayakhajonwut, Somboon Tanasupawat “Micromonospora radicis sp. nov., isolated from roots of VAzadirachta indica var. siamensis Valenton, and reclassification of Jishengella zingiberis as Micromonospora zingiberis comb. nov.” International Journal of Systematic and Evolutionary Microbiology, 69(9) 2884-2891, 2019.09, doi: 10.1099/ijsem.0.003574

Sineenath Kunthiphun, Thippawan Wattanagonniyom, Rikiya Endoh, Masako Takashima, Moriya Ohkuma, Somboon Tanasupawat, Ancharida Savarajara “Heterocephalacria mucosa sp. nov., a new basidiomycetous yeast species isolated from a mangrove forest in Thailand, International Journal of Systematic and Evolutionary Microbiology, 69(9) 2823-2827, 2019.09, doi: 10.1099/ijsem.0.003562

Akira S. Hirao, Ryosuke Imai, Rikiya Endoh, Moriya Ohkuma, Yousuke Degawa “Draft Genome Sequence of Novel Metschnikowia sp. Strain JCM 33374, a Nectar Yeast Isolated from a Bumblebee” Microbiology Resource Announcements, 8(37) e00704-19, 2019.09, doi: 10.1128/MRA.00704-19

Shingo Kato, Shinsaku Nakano, Mariko Kouduka, Miho Hirai, Katsuhiko Suzuki, Takashi Itoh, Moriya Ohkuma, Yohey Suzuki “Metabolic Potential of As-yet-uncultured Archaeal Lineages of Candidatus Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits” Microbes and Environments, 34(3) 293-303, 2019.09, doi: 10.1264/jsme2.ME19021