研究成果

研究成果2021年度

Researsh Articles/Reviews

(Under Construction)

Nanako Kanno, Shingo Kato, Moriya Ohkuma, Motomu Matsui, Wataru Iwasaki, Shinsuke Shigeto “Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotes” iScience, 24(9) 102975, 2021.09, doi: 10.1016/j.isci.2021.102975

Toyofuku, M, Nomura, N, Eberl, L “Membrane vesicles and quantized bacterial signaling” Physical Biology, xx(-) x-y, 2021.06, doi: TBA

Kunoh, T, Yamamoto, T, Sugimoto, S, Ono, E, Nomura, N, Utada, AS “Leptothrix cholodnii Response to Nutrient Limitation” Frontiers in Microbiology, 12(-) 691563, 2021.07, doi: 10.3389/fmicb.2021.691563

Abe, K, Toyofuku, M, Nomura, N, Obana, N “Autolysis-mediated membrane vesicle formation in Bacillus subtilisEnvironmental Microbiology, 23(5) 2632-2647, 2021.05, doi: 10.1111/1462-2920.15502

Shimada, S*, Nakai, R*, Aoki, K, Kudoh, S, Imura, S, Shimoeda, N, Ohno, G, Watanabe, K, Miyazaki, Y, Ishii, Y, Tateda, K “Characterization of the first cultured psychrotolerant representative of Legionella from Antarctica reveals its unique genome structure” Microbiology Spectrum, xx(-) x-y, 2021.00, doi: TBA (*equal contribution)

Nakai, R*, Kusada, H*, Sassa, F, Morigasaki, S, Hayashi, H, Takaya, N, Tamaki, H “Draft genome sequence of novel filterable Rhodospirillales bacterium strain TMPK1, isolated from soil” Microbiology Resource Announcements10(28) e00393-21, 2021.07, doi: 10.1128/MRA.00393-21 (*equal contribution)

Nakai R, Naganuma T, Tazato N, Kunihiro T, Morohoshi S, Koide T, Kusada H, Tamaki H, Narihiro T “Characterization of Terrihabitans soli gen. nov., sp. nov., a novel 0.2 μm-filterable soil bacterium belonging to a widely distributed lineage of Hyphomicrobiales (Rhizobiales)” Diversity, 13(9) 422, 2021.07, doi: 10.3390/d13090422

中井亮佑(2021) 極地に生きる未知微生物は何者か?、極限環境生物学会誌、19号、p 25-31.(in Japanese with English abstract and figures)

Mori, Y., Kawamura, H., Sato, T., Fujita, T., Nagata, R., Fujihashi, M., Miki, K., Atomi, H. “Identification and enzymatic analysis of an archaeal ATP-dependent serine kinase from the hyperthermophilic archaeon Staphylothermus marinus Journal of Bacteriology, 203(16) e0002521, 2021.07, doi: 10.1128/JB.00025-21 

Melina Kerou, Rafael I Ponce-Toledo, Rui Zhao, Sophie S Abby, Miho Hirai, Hidetaka Nomaki, Yoshihiro Takaki, Takuro Nunoura, Steffen L Jørgensen, Christa Schleper “Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages” ISME Journal, 15(-) 2792-2808, 2021.04, doi: 10.1038/s41396-021-00962-6

跡見晴幸「超好熱菌の高温適応戦略」熱測定, 48(2) 78, 2021.04, abstract

Seiji Kawai, Yuko Sugaya, Ryota Hagihara, Hiroya Tomita, Yohei Katsuyama, and Yasuo Ohnishi “Complete biosynthetic pathway of alazopeptin, a tripeptide consisting of two molecules of 6-diazo-5-oxo-L-norleucine and one molecule of alanine” Angewandte Chemie-International Edition, 60(18) 10319-10325, 2021.04, doi: 10.1002/anie.202100462

Chakraborty J, Suzuki-Minakuchi C, Tomita T, Okada K, Nojiri H “A novel gene cluster is involved in the degradation of lignin-derived monoaromatics in Thermus oshimai JL-2″ Applied and Environmental Microbiology, 87(11) e01589-20, 2021.00, doi: 10.1128/AEM.01589-20

Mpofu E, Alias A, Tomita K, Suzuki-Minakuchi C, Tomita K, Chakraborty J, Malon M, Ogura Y, Takikawa H, Okada K, Kimura T, Nojiri H “Azoxystrobin amine: A novel azoxystrobin degradation product from Bacillus licheniformis strain TAB7″ Chemosphere, 273(-) 129663, 2021.06, doi: 10.1016/j.chemosphere.2021.129663

Laothamteep N, Kawano H, Vejarano F, Suzuki-Minakuchi C, Shintani M, Nojiri H, Pinyakong O “Effects of environmental factors and coexisting substrates on PAH degradation and transcriptomic responses of the defined bacterial consortium OPK” Environmental Pollution, 277(-) 116769, 2021.05, doi: 10.1016/j.envpol.2021.116769

Nanami Sakata, Takako Ishiga, Shunsuke Masuo, Yoshiteru Hashimoto, Yasuhiro Ishiga “Coronatine contributes to Pseudomonas cannabina pv. alisalensis virulence by overcoming both stomatal and apoplastic defenses in dicot and monocot plants” Molecular Plant-Microbe Interactions, x(-) xx-yy, 2021.08, doi: 10.1094/MPMI-09-20-0261-R

Takuto Kumano, Sanae Hori, Satomi Watanabe, Yuzu Terashita, Hong Yang Yu, Yoshiteru Hashimoto, Toshiya Senda, Miki Senda, Michihiko Kobayashi “FAD-dependent C-glycoside–metabolizing enzymes in microorganisms: Screening, characterization, and crystal structure analysis” Proceedings of the National Academy of Sciences, 118(40) e2106580118, 2021.10, doi: 10.1073/pnas.2106580118

 

Iino, T., Oshima, K., Hattori, M., Ohkuma, M., and Amachi, S. “Iodidimonas gelatinilytica sp. nov., aerobic iodide-oxidizing bacteria isolated from brine water and surface seawater” Antonie van Leeuwenhoek. 114: 625–631. 2021. PMID:33761033.

Suzuki-Hashido, N., Tsuchida, S., Hayakawa, T., Sakamoto, M., Azumano, A., Seino, S., Matsuda, I., Ohkuma, M., and Ushida, K. “Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus)” Int. J. Syst. Evol. Microbiol. 71: 004787. 2021. PMID: 33906706.

Tohno, M., Tanizawa, Y., Kojima, Y., Sakamoto, M., Ohkuma, M., and Kobayashi, H. “Lactobacillus cortices sp. nov., isolated from hardwood bark”  Int. J. Syst. Evol. Microbiol. 71(7): 004882. 2021. PMID: 34264810.

Saeng-in P, Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S. “Actinoplanes lichenicola sp. nov., and Actinoplanes ovalisporus sp. nov., isolated from lichen in Thailand” Int. J. Syst. Evol. Microbiol. 71(7): 004921. doi: 10.1099/ijsem.0.004921. 2021. PMID: 34319866

Kobayashi, H., Tanizawa, Y., Sakamoto, M., Ohkuma, M., and Tohno, M. “Taxonomic status of the species Clostridium methoxybenzovorans Mechichi et al. 1999” Int. J. Syst. Evol. Microbiol. 71: 004951. 2021. PMID:34379581.

Sakamoto, M., Ikeyama, N., Toyoda, A., Murakami, T., Mori, H., Morohoshi, S., Kunihiro, T., Iino, T., and Ohkuma, M. “Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces” Microbiol. Immunol. 65: 245-256. 2021. PMID: 33913539.

Ogata, Y., Sakamoto, M., Ohkuma, M., Hattori, M., and Suda, W. “Complete genome sequence of Longicatena caecimuris strain 3BBH23, isolated from healthy japanese feces” Microbiol. Resour. Announc. 10: e00282-21. 2021. PMID:34016676.

Kato S, Ohkuma M. “A Single Bacterium Capable of Oxidation and Reduction of Iron at Circumneutral pH. Microbiol. Spectr. 9(1): e0016121. doi: 10.1128/Spectrum.00161-21. 2021. PMID: 34431720

Endoh, R., Horiyama, M., and Ohkuma, M. “D-Fructose assimilation and fermentation by yeasts belonging to saccharomycetes: rediscovery of universal phenotypes and elucidation of fructophilic behaviors in Ambrosiozyma platypodis and Cyberlindnera americana” Microorganisms. 9: 758. 2021. PMID:33916327.

Ikeyama, N., Sakamoto, M., Ohkuma, M., Hiramoto, S., Wang, J., Tone, S., and Shiiba, K. “Fecal microbiota perspective for evaluation of prebiotic potential of bamboo hemicellulose hydrolysate in mice: A preliminary study” Microorganisms. 9: 888. 2021. PMID:33919296.

 

Shimamori Y, Pramono AK, Kitao T, Suzuki T, Aizawa SI, Kubori T, Nagai H, Takeda S, Ando H “Isolation and Characterization of a Novel Phage SaGU1 that Infects Staphylococcus aureus Clinical Isolates from Patients with Atopic Dermatitis” Current Microbiology, 78(4) 1267-1276, 2021.04,  doi: 10.1007/s00284-021-02395-y

Naradasu, D., Miran, W., Sharma, S., Takenawa, S., Soma, T., Nomura, N.Toyofuku, M., Okamoto, A. “Biogenesis of Outer Membrane Vesicles Concentrates the Unsaturated Fatty Acid of Phosphatidylinositol in Capnocytophaga ochraceaFrontiers in Microbiology, 12(-) 682685, 2021.05, doi: 10.3389/fmicb.2021.682685

Miho Hirai, Yoshihiro Takaki, Fumie Kondo, Masayuki Horie, Syun-ichi Urayama, Takuro Nunoura “RNA viral metagenome analysis from subnanogram dsRNA using fragmented and primer ligated dsRNA sequencing (FLDS)” Microbes and Environments, 36(2) ME20152, 2021.05, doi: 10.1264/jsme2.ME20152

Pamela Gan, Ryoko Hiroyama, Ayako Tsushima, Sachiko Masuda, Arisa Shibata, Akiko Ueno, Naoyoshi Kumakura, Mari Narusaka, Trinh Xuan Hoat, Yoshihiro Narusaka, Yoshitaka Takano, Ken Shirasu “Telomeres and a repeat-rich chromosome encode effector gene clusters in plant pathogenic Colletotrichum fungi” Environmental Microbiology, xx(-) xxx-yyy, 2021.03, doi: 10.1111/1462‐2920.15490

Invited Talks/International meetings

準備中

Awards

準備中

Books

準備中

Patents

準備中

Outreach activity etc

準備中

研究成果2020年度

Researsh Articles/Reviews

A01班
L. Ge, X. Ye, B. Chen, C. Liu, H. Guo, F. Sassa, K. Hayashi “Chemiresistor sensor matrix prepared by full-printing processes” Flexible and Printed Electronics, 6(1) 15013, 2021.03, doi: 10.1088/2058-8585/abec19

Mitsuru Yasuda, Norio Takeshita, and Shinsuke Shigeto, “Deuterium-labeled Raman tracking of glucose accumulation and protein metabolic dynamics in Aspergillus nidulans hyphal tips” Scientific Reports, 11(-) 1279, 2021.01, doi: 10.1038/s41598-020-80270-9

Hiroto Horiue, Mai Sasaki, Yuki Yoshikawa, Masanori Toyofuku, and Shinsuke Shigeto “Raman spectroscopic signatures of carotenoids and polyenes enable label-free visualization of microbial distributions within pink biofilms” Scientific Reports, 10(-) 7704, 2020.05, doi: 10.1038/s41598-020-64737-3

Shogo Toda, Naoya Yanagita, Efat Jokar, Eric Wei-Guang Diau, and Shinsuke Shigeto “Inter- and Intragrain Inhomogeneity in 2D Perovskite Thin Films Revealed by Relative Grain Orientation Imaging Using Low-Frequency Polarized Raman Microspectroscopy” The Journal of Physical Chemistry Letters, 11(10) 3871-3876, 2020.05, doi: 10.1021/acs.jpclett.0c00992

Takayuki Hiraoka and Shinsuke Shigeto “Interactions of water confined in a metal-organic framework as studied by a combined approach of Raman, FTIR, and IR electroabsorption spectroscopies and multivariate curve resolution analysis” Physical Chemistry Chemical Physics, 22(32) 17798-17806, 2020.08, doi: 10.1039/D0CP02958K

Yuki Yoshikawa and Shinsuke Shigeto “A Simple Calibration Method of Anti-Stokes-Stokes Raman Intensity Ratios Using the Water Spectrum for Intracellular Temperature Measurements” Applied Spectroscopy, 74(10) 1295-1300, 2020.10, doi: 10.1177/0003702820933908

重藤真介 「微生物1細胞および集団のラマン分光イメージング」生物工学, 98(7) 353-356, 2020.07, pdf

Nagakubo, T., Tahara YO, Miyata M, Nomura N, Toyofuku M “Mycolic acid-containing bacteria trigger distinct types of membrane vesicles through different route” iScience, 24(1) 102015, 2021.01, doi: 10.1016/j.isci.2020.102015

Komaba K, Nomura N, Goto H “Electrochemical polymerization in a biological communication material” International Journal of Polymeric Materials and Polymeric Biomaterials, -(-) -, 2020.09, doi: 10.1080/00914037.2020.1809408

Morinaga, K., Nagakubo, T., Nomura, N., Toyofuku, M. “Involvement of membrane vesicles in long-chain-AHL delivery in Paracoccus species” Environmental Microbiology Reports, 12(3) 355-360, 2020.04, doi: 10.1111/1758-2229.12843

Inaba T, Obana, N., Habe, H., and Nomura, N. “Biofilm Formation by Streptococcus mutans is Enhanced by Indole via the Quorum Sensing Pathway” Microbes and Environments, 35(2) ME19164 ,2020.04, doi: 10.1264/jsme2.ME19164

Tomohiro Hirayama, Kyosuke Takabe, Tatsunori Kiyokawa, Nobuhiko Nomura, and Yutaka Yawata “Reconstruction of Single-Cell Innate Fluorescence Signature by Confocal Microscopy” Journal of Visualised Experiments, 159(-) e61120, 2020.05, doi: 10.3791/61120

Nguyen, B.V.G., Nagakubo, T., Toyofuku, M., Nomura, N., and Utada, A.S. “Synergy between Sophorolipid Biosurfactant and SDS Increases the Efficiency of P. aeruginosa Biofilm Disruption” Langmuir, 36(23) 6411-6420, 2020.06, doi: 10.1021/acs.langmuir.0c00643

Yang, J., Yang, Y., Ishii, M., Nagata, M., Aw, W., Obana, N., Tomita, M., Nomura, N., and Fukuda, S. “Does the Gut Microbiota Modulate Host Physiology through Polymicrobial Biofilms?” Microbes and Environments, 35(3) ME20037, 2020.06, doi: 10.1264/jsme2.ME20037

Obana, N., Nakamura, K., and Nomura, N. “Temperature-regulated heterogeneous extracellular matrix gene expression defines biofilm morphology in Clostridium perfringens” NPJ Biofilms and Microbiomes, 6(1) 29, 2020.07, doi: 10.1038/s41522-020-00139-7

Nagasawa, R., Sato, T., Nomura, N., Nakamura, T., and Senpuku, H. “Potential risk to spread resistant genes within the extracellular DNA-dependent biofilm of Streptococcus mutans in response to cell envelope stress induced by sub-MIC of bacitracin” Applied and Environmental Microbiology, 86(16) e00770-20, 2020.08, doi: 10.1128/AEM.00770-20

Abeysinghe, G., Kuchira, M., Kudo, G., Masuo, S., Ninomiya, A., Takahashi, K., Utada, A.S., Hagiwara, D., Nomura, N., Takaya, N., Obana, N., and Takeshita, N. “Fungal mycelia and bacterial thiamine establish a mutualistic growth mechanism” Life Science Alliance, 3(12) e202000878, 2020.09, doi: 10.26508/lsa.202000878

Nagasawa, R., Yamamoto, T., Utada, A.S., Nomura, N., and Obana, N. “Competence-stimulating-peptide-dependent localized cell death and extracellular DNA production in Streptococcus mutans biofilms” Applied and Environmental Microbiology, 86(23) AEM02080-20, 2020.11, doi: 10.1128/AEM.02080-20

Sakamoto, S., Nobu, M.K., Mayumi, D., Tamazawa, S., Kusada, H., Yonebayashi, H., Iwama, H., Ikarashi, M., Wakayama, T., Maeda, H., Sakata, S., Tamura, T., Nomura, N., Kamagata, Y., and Tamaki, H.Koleobacter methoxysyntrophicus gen. nov., sp. nov., a novel anaerobic bacterium isolated from deep subsurface oil field and proposal of Koleobacteraceae fam. nov. and Koleobacterales ord. nov. within the class Clostridia of the phylum FirmicutesSystematic Applied Microbiology, 44(1) 126154, 2021.01, doi: 10.1016/j.syapm.2020.126154

Vitale, A., Paszti, S., Takahashi, K., Toyofuku, M., Pessi ,G., and Eberl, L. “Mapping of the Denitrification Pathway in Burkholderia thailandensis by Genome-Wide Mutant Profiling” Journal of Bacteriology, 202(23) e00304-20, 2020.11, doi: 10.1128/JB.00304-20

Yamamoto K, Kusada H, Kamagata Y, Tamaki H “Parallel evolution of enhanced biofilm formation and phage-resistance in Pseudomonas aeruginosa during adaptation process in spatially heterogeneous environments” Microorganisms, 9(3) 569, 2021.03, doi: 10.3390/microorganisms9030569

Tomoki Iwashita, *Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Yan Li, Tadashi Toyama, Yoichi Kamagata, Kazuhiro Mori “Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialisMicrobes and Environments, 35(3) ME20081, 2020.07, doi: 10.1264/jsme2.ME20081

Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Ryosuke Nakai, Yasuko Yoneda, Ayaka Makino, Tadashi Toyama, Yoichi Kamagata, Masaaki Morikawa, Kazuhiro Mori “Isolation and Characterization of Novel Plant Growth-Promoting Bacteria from the Fronds of Duckweed” Jpn J. Water Treat. Biol., 57(1) 1-9, 2021.01, doi: 10.2521/jswtb.57.1

Yu Nakajima, Keiichi Kojima, Yuichiro Kashiyama, Satoko Doi, Ryosuke Nakai, Yuki Sudo, Kazuhiro Kogure, Susumu Yoshizawa “Bacterium lacking a known gene for retinal biosynthesis constructs functional rhodopsins” Microbes and Environments, 35(4) ME20085, 2020.12, doi: 10.1264/jsme2.ME20085

David W Waite, Maria Chuvochina, Claus Pelikan, Donovan H Parks, Pelin Yilmaz, Michael Wagner, Alexander Loy, Takeshi Naganuma, Ryosuke Nakai, William B Whitman, Martin W Hahn, Jan Kuever, Philip Hugenholtz “Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities” International Journal of Systematic and Evolutionary Microbiology, 70(11) 5972-6016, 2020.12, doi: 10.1099/ijsem.0.004213

Sho Shimada*, Ryosuke Nakai*, Kotaro Aoki, Norifumi Shimoeda, Giichiro Ohno, Yasunari Miyazaki, Sakae Kudoh, Satoshi Imura, Kentaro Watanabe, Yoshikazu Ishii, and Kazuhiro Tateda (*equal contribution) “Complete genome sequence of novel psychrotolerant Legionella strain TUM19329, isolated from Antarctic lake sediment” Microbiology Resource Announcements, 9(16) e00253-20,,2020.04, doi: 10.1128/MRA.00253-20

Ryosuke Nakai  “Size Matters: Ultra-small and Filterable Microorganisms in the Environment” Microbes and Environments, 35(2) ME20025, 2020.06, doi: 10.1264/jsme2.ME20025

Ryosuke Nakai, Takeshi Naganuma, Nozomi Tazato, Sho Morohoshi, and Tomomi Koide “Cell Plasticity and Genomic Structure of a Novel Filterable Rhizobiales Bacterium that Belongs to a Widely Distributed Lineage” Microorganisms8(9) 1373, 2020.09, doi: 10.3390/microorganisms8091373

Shunsuke Tomita, Hiroyuki Kusada, Naoshi Kojima, Sayaka Ishihara, Koyomi Miyazaki, Hideyuki Tamaki, and Ryoji Kurita “Polymer-based chemical nose systems for optical pattern recognition of gut microbiota” ChemRxiv, 2020.07, doi: 10.26434/chemrxiv.12649826.v1

Ren-Chao Zheng, Xia-Feng Lu, Hiroya Tomita, Shin-Ichi Hachisuka, Yu-Guo Zheng, Haruyuki Atomi “TK1211 encodes an amino acid racemase towards leucine and methionine in the hyperthermophilic archaeon Thermococcus kodakarensisJournal of Bacteriology, 203(7) e00617-20, 2021.03, doi: 10.1128/JB.00617-20

Gabriel V Pereira, Ahmed M Abdel-Hamid, Soumajit Dutta, Corina N D’Alessandro-Gabazza, Daniel Wefers, Jacob A Farris, Shiv Bajaj, Zdzislaw Wawrzak, Haruyuki Atomi, Roderick I Mackie, Esteban C Gabazza, Diwakar Shukla, Nicole M Koropatkin, Isaac Cann “Degradation of complex arabinoxylans by human colonic Bacteroidetes” Nature Communications, 12(1) 459, 2021.01, doi: 10.1038/s41467-020-20737-5

Jian-Qiang Jin, Shin-Ichi Hachisuka, Takaaki Sato, Tsuyoshi Fujiwara, Haruyuki Atomi “Identification of a structurally novel lipoyl synthase in the hyperthermophilic archaeon Thermococcus kodakarensisApplied and Environmental Microbiology, 86(23) e01359-20, 2020.11, doi: 10.1128/AEM.01359-20

Isaac Cann, Gabriel V. Pereira, Ahmed M. Abdel-Hamid, Heejin Kim, Daniel Wefers, Boniface B. Kayang, Tamotsu Kanai, Takaaki Sato, Rafael C. Bernardi, Haruyuki Atomi, and Roderick I. Mackie “Thermophilic degradation of hemicellulose, a critical feedstock in the production of bioenergy and other value-added products” Applied and Environmental Microbiology, 86(7) e02296-19, 2020.03, doi: 10.1128/AEM.02296-19 (Review article)

Takaaki Sato, Daisuke Takada, Takashi Itoh, Moriya Ohkuma, and Haruyuki Atomi “Integration of large heterologous DNA fragments into the genome of Thermococcus kodakarensisExtremophiles24(3) 339-353, 2020.05, doi: 10.1007/s00792-020-01159-z(A02-4班との共同)

Hugo Maruyama, Eloise I Prieto, Takayuki Nambu, Chiho Mashimo, Kosuke Kashiwagi, Toshinori Okinaga, Haruyuki Atomi, and Kunio Takeyasu “Different proteins mediate step-wise chromosome architectures in Thermoplasma acidophilum and Pyrobaculum calidifontisFrontiers in Microbiology11(-) 1247, 2020.06, doi: 10.3389/fmicb.2020.01247

Alison E. Murray, John Freudenstein, Simonetta Gribaldo, Roland Hatzenpichler, Philip Hugenholtz, Peter Kämpfer, Konstantinos T. Konstantinidis, Christopher E. Lane, R. Thane Papke, Donovan H. Parks, Ramon Rossello-Mora, Matthew B. Stott, Iain C. Sutcliffe, J. Cameron Thrash, Stephanus N. Venter, William B. Whitman, Silvia G. Acinas, Rudolf I. Amann, Karthik Anantharaman, Jean Armengaud, Brett J. Baker, Roman A. Barco, Helge B. Bode, Eric S. Boyd, Carrie L. Brady, Paul Carini, Patrick S. G Chain, Daniel R. Colman, Kristen M. DeAngelis, Maria Asuncion de Los Rios, Paulina Estrada-de Los Santos, Christopher A. Dunlap, Jonathan A. Eisen, David Emerson, Thijs J. G. Ettema, Damien Eveillard, Peter R. Girguis, Ute Hentschel, James T. Hollibaugh, Laura A. Hug, William P. Inskeep, Elena P. Ivanova, Hans-Peter Klenk, Wen-Jun Li, Karen G. Lloyd, Frank E Löffler, Thulani P. Makhalanyane, Duane P. Moser, Takuro Nunoura, Marike Palmer, Victor Parro, Carlos Pedrós-Alió, Alexander J. Probst, Theo H. M. Smits, Andrew D. Steen, Emma T. Steenkamp, Anja Spang, Frank J. Stewart, James M. Tiedje, Peter Vandamme, Michael Wagner, Feng-Ping Wang, Brian P. Hedlund, and Anna-Louise Reysenbach “Roadmap for naming uncultivated Archaea and Bacteria” Nature Microbiology, 5(8) 987-994, 2020.08, doi: 10.1038/s41564-020-0733-x (Consensus Statement)

布浦拓郎力石嘉人跡見晴幸「マルチオミクス解析による好熱性水素酸化細菌からの可逆的TCA 回路の発見」低温科学, 79 31-36, 2021.03, pdf

島村繁、澄田智美、布浦拓郎「オービトラップ質量分析計を用いたアミノ酸解析の可能性」低温科学, 79 37-42, 2021.03, pdf

澄田智美、島村繁、布浦拓郎「Orbitrap Fusionを用いたCE-MSと四重極GC-MSでのアミノ酸分析の比較」低温科学, 79 43-49, 2021.03, pdf

Yuichiro Hashiguchi, Takeaki Tezuka, Yoshihiro Mouri, Kenji Konishi, Azusa Fujita, Aiko Hirata, and Yasuo Ohnishi “Regulation of Sporangium Formation, Spore Dormancy, and Sporangium Dehiscence by a Hybrid Sensor Histidine Kinase in Actinoplanes missouriensis: Relationship with the Global Transcriptional Regulator TcrA” Journal of Bacteriology, 202(21) e00228-20, 2020.11, doi: 10.1128/JB.00228-20

Yuichiro Hashiguchi, Takeaki Tezuka, Yasuo Ohnishi “Involvement of three FliA-family sigma factors in the sporangium formation, spore dormancy and sporangium dehiscence in Actinoplanes missouriensisMolecular Microbiology, 113(6) 1170-1188, 2020.06, doi: 10.1111/mmi.14485

Ratchanee Mingma, Yuki Inahashi, Atsuko Matsumoto, Yoko Takahashi, and Kannika Duangmal “Amycolatopsis pithecelloba sp. nov., a novel actinomycete isolated from roots of Pithecellobium dulce in Thailand” Journal of Antibiotics73(4) 230-235, 2020.04, doi: 10.1038/s41429-019-0271-z

Nattaporn Klykleung, Masahiro Yuki, Takuji Kudo, Moriya Ohkuma, Wongsakorn Phongsopitanun, Yuki Inahashi, Atsuko Matsumoto, and Somboon Tanasupawat “Streptomyces mimosae sp. nov., an endophytic actinomycete isolated from the root of Mimosa pudica in Thailand” International Journal of Systematic and Evolutionary Microbiology70(5) 3316-3322, 2020.05, doi: 10.1099/ijsem.0.004170(A02-4班との共同)

A02班

Ochi K, Tokuda M, Yanagiya K, Suzuki-Minakuchi C, Nojiri H, Yuki M, Ohkuma M, Kimbara K, Shintani M “Oxygen concentration affects frequency and range of transconjugants for the incompatibility (Inc) P-1 and P-7 plasmids pBP136 and pCAR1” Bioscience Biotechnology and Biochemistry, 85(4) 1005-1015, 2021.03, doi: 10.1093/bbb/zbaa118 (A02-4班との共同)

Tokuda, M., Suzuki, H., Yanagiya, K., Yuki, M., Inoue, K., Ohkuma, M., Kimbara, K., and Shintani, M. “Determination of plasmid pSN1216-29 host range and the similarity in oligonucleotide composition between plasmid and host chromosomes” Frontiers in Microbiology11(-) 1187, 2020.06, doi: 10.3389/fmicb.2020.01187(A02-4班との共同)

Shintani, M., Nour, E., Elsayed, T.S.R., Blau, K., Wall, I., Jechalke, S., Spröer, C., Bunk, B., Overmann, J., and Smalla, K. “Plant species-dependent increased abundance and diversity of IncP-1 plasmids in the rhizosphere -new insights into their role and ecology” Frontiers in Microbiology11(-) 590776, 2020.11, doi: 10.3389/fmicb.2020.590776

Nakamura, T., Suzuki-Minakuchi, C., Kawano, H., Kanesaki, Y., Kawasaki, S., Okada, and K., Nojiri, H. “H-NS family proteins drastically change their targets in response to the horizontal transfer of the catabolic plasmid pCAR1” Frontiers in Microbiology11(-) 1099, 2020.05, doi: 10.3389/fmicb.2020.01099

Kawano, H., Suzuki-Minakuchi, C., Sugiyama, D., Watanabe, N., Takahashi, Y., Okada, K., and Nojiri, H. “A novel small RNA on the Pseudomonas putida KT2440 chromosome is involved in the fitness cost imposed by IncP-1 plasmid RP4” Frontiers in Microbiology, 11(-) 1328, 2020.06, doi: 10.3389/fmicb.2020.01328

Sayumi Fukuda, Riho Yamamoto, Naoki Yanagisawa, Naoki Takaya, Yoshikatsu Sato, Meritxell Riquelme, Norio Takeshita “Trade-off between Plasticity and Velocity in Mycelial Growth” mBio, 12(2) e03196-20, 2021.03, doi: 10.1128/mBio.03196-20

Mizuki Yasui, Ken Oda, Shunsuke Masuo, Shuji Hosoda, Takuya Katayama, Jun-Ichi Maruyama, Naoki Takaya, Norio Takeshita “Invasive growth of Aspergillus oryzae in rice koji and increase of nuclear number” Fungal Biology and Biotechnology, 7(-) 8, 2020.06, doi: 10.1186/s40694-020-00099-9

Hiroshi Kanazawa, Sayoko Ozaki, Yuki Doi, Shunsuke Masuo, Naoki Takaya “Symbiotic riboflavin degradation by Microbacterium and Nocardioides bacteria” Bioscience Biotechnology and Biochemistry, 84(5) 1056-1061, 2020.05, doi: 10.1080/09168451.2020.1715783

Aniruddha Nag, Mohammad Asif Ali, Hideo Kawaguchi, Shun Saito, Yukie Kawasaki, Shoko Miyazaki, Hirotoshi Kawamoto, Deddy Triyono Nugroho Adi, Kumiko Yoshihara, Shunsuke Masuo, Yohei Katsuyama, Akihiko Kondo, Chiaki Ogino, Naoki Takaya, Tatsuo Kaneko, Yasuo Ohnishi “Ultrahigh Thermoresistant Lightweight Bioplastics Developed from Fermentation Products of Cellulosic Feedstock” Advanced Sustainable Systems, 5(1), 2000193, 2020.05, doi: 10.1002/adsu.202000193

Susumu Morigasaki, Akinori Umeyama, Yusuke Kawano, Yasushi Aizawa, and Iwao Ohtsu “Defect of RNA pyrophosphohydrolase RppH enhances fermentative production of L-cysteine in Escherichia coliJournal of General and Applied Microbiology, 66(6) 307-314, 2020.08, doi: 10.2323/jgam.2019.12.004

Tomoyuki Kamide, Shun Takusagawa, Naoyuki Tanaka, Yasushi Ogasawara, Yusuke Kawano, Iwao Ohtsu, Yasuharu Satoh, Tohru Dairi “High production of ergothioneine in Escherichia coli using the sulfoxide synthase from Methylobacterium strains” Journal of Agricultural and Food Chemistry, 68(23) 6390-6394, 2020.07, doi: 10.1021/acs.jafc.0c01846

Yoshiki Matsuda, Nobuyuki Ozawa, Takiko Shinozaki, Ken-Ichi Wakabayashi, Kosuke Suzuki, Yusuke Kawano, Iwao Ohtsu, Yoshitaka Tatebayashi “Ergothioneine, a metabolite of the gut bacterium Lactobacillus reuteri, protects against stress-induced sleep disturbances” Translational Psychiatry, 10(1) 170, 2020.05, doi: 10.1038/s41398-020-0855-1

大津厳生「ヒトの健康に必須なエルゴチオネインの発酵生産法の確立と評価系Sulfer index」JATAFFジャーナル , 8(9) 30-35, 2020.09

Kazumori Mise, and Wataru Iwasaki “Environmental atlas of prokaryotes enables powerful and intuitive habitat-based analysis of community structures” iScience, 23(-) 101624, 2020.10, doi: 10.1016/j.isci.2020.101624

Kaori Motoki, Tomo-o Watsuji, Yoshihiro Takaki, Ken Takai, and Wataru Iwasaki “Metatranscriptomics by in situ RNA stabilization directly and comprehensively revealed episymbiotic microbial communities of deep-sea squat lobsters” mSystems, 5(-) e00551-20,  2020.09, doi: 10.1128/mSystems.00551-20

Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S. “Nocardia terrae sp. nov., an actinomycete isolated from soil in Thailand” Archives of Microbiology, 203(3) 1071-1077, 2021.01, doi: 10.1007/s00203-020-02107-3

Kato S, Ohnishi M, Nagamori M, Yuki M, Takashina T, Ohkuma M, Itoh TConexivisphaera calida gen. nov., sp. nov., a thermophilic sulfur- and iron-reducing archaeon, and proposal of Conexivisphaeraceae fam. nov., Conexivisphaerales ord. nov., and Conexivisphaeria class. nov. in the phylum ThaumarchaeotaInternational Journal of Systematic and Evolutionary Microbiology, 71(1) 4595, 2021.01, doi: 10.1099/ijsem.0.004595

Shi W, Sun Q, Fan G, Sugawara H, Ohkuma M, Itoh T, Zhou Y, Cai M, Kim SG, Lee JS, Sedlacek I, Arahal D, Lucena T, Kawasaki H, Evtushenko L, Weir B, Alexander S, Dénes D, Tanasupawat S, Eurwilaichitr L, Ingsriswang S, Gomez-Gil B, Hazbón M, Riojas M, Suwannachart C, Su Y; Vandamme P, Peng F, Chen Z, Liu D, Sun X, Zhang X, Zhou Y, Meng Z, Wu L, Ma J. “gcType: a high-quality type strain genome database for microbial phylogenetic and functional research” Nucleic Acids Research, 49(D1) D694-D705, 2021.01, doi: 10.1093/nar/gkaa957

Tanno H, Fujii T, Hirano K, Maeno S, Tonozuka T, Sakamoto M, Ohkuma M, Tochio T, Endo A “Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers” Gut Microbes, 13(1) e1869503, 2021.01, doi: 10.1080/19490976.2020.1869503

Songsumanus A, Kuncharoen N, Kudo T, Yuki M, Ohkuma M, Igarashi Y., Tanasupawat S. “Actinomadura decatromicini sp. nov., isolated from mountain soil in Thailand” Journal of Antibiotics, 74(1) 51-58, 2021.01, doi:  10.1038/s41429-020-0353-y

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W “Complete Genome Sequence of Alistipes indistinctus strain 2BBH45 Isolated from Healthy Japanese Feces” Microbiology Resource Announcements, 10(2) e01284-20, 2021.01, doi: 10.1128/MRA.01284-20

Ikeyama N, Ohkuma M, Sakamoto M “Stress response of Mesosutterella multiformis mediated by nitrate reduction” Microorganisms, 8(12) 2003, 2020.12, doi: 10.3390/microorganisms8122003

Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H “Haloarcula mannanilytica sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt” International Journal of Systematic and Evolutionary Microbiology, 70(12) 6331-6337, 2020.12, doi: 10.1099/ijsem.0.004535

Sakamoto M, Ikeyama N, Toyoda A, Murakami T, Mori H, Ohkuma M “Complete Genome Sequence of Faecalibacillus intestinalis JCM 34082, Isolated from Feces of a Healthy Japanese Female” Microbiology Resource Announcements, 9(50) e01160-20, 2020.12, doi: 10.1128/MRA.01160-20

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W “Complete Genome Sequence of Adlercreutzia sp. strain 8CFCBH1, a Potent Producer of Equol, Isolated from Healthy Japanese Feces “Microbiology Resource Announcements, 9(49) e01240-20, 2020.12, doi: 10.1128/MRA.01240-20

Takashima M, Manabe R, Ohkuma M “Draft Genome Sequence of Oleaginous Yeast Saitozyma sp. JCM 24511 Isolated from Soil on Iriomote Island, Okinawa, Japan “Microbiology Resource Announcements, 9(48) e00196-20, 2020.11, doi: 10.1128/MRA.00196-20

Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S “Nocardia aurantiaca sp. nov., isolated from soil in Thailand” International Journal of Systematic and Evolutionary Microbiology, 70(10) 5432-5438, 2020.10, doi: 10.1099/ijsem.0.004432

Ikeyama N, Murakami T, Toyoda A, Mori H, Iino T, Ohkuma M, Sakamoto M “Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicronMicrobiologyOpen, 9(10) e1111, 2020.10, doi: 10.1002/m+Q12bo3.1111

Nishimura Y, Kume K, Sonehara K, Tanifuji G, Shiratori T, Hashimoto T, Ishida K, Inagaki Y, Ohkuma M “Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista” Frontiers in Ecology and Evolution, 8(-) 140, 2020.06, doi: 10.3389/fevo.2020.00140

Bourguignon, T., Kinjo, Y., Villa-Mart?n, P., Coleman, N.V., Tang, Q., Arab, D.A., Wang, Z., Tokuda, G., Hongoh, Y., Ohkuma, M., Ho, S.Y.W., Pigolotti, S., and Lo, N. “Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes” Current Biology, 30(19) 3848-3855, 2020.10, doi: 10.1016/j.cub.2020.07.034(公募班本郷Gと共同)

Takaki, K., Tahara, Y.O., Nakamichi, N., Hasegawa, Y., Shintani, M., Ohkuma, M., Miyat, M. Futamata, H., and Tashiro, Y. “Multilamellar and Multivesicular Outer Membrane Vesicles Produced by a Buttiauxella agrestis tolB Mutant” Applied and Environmental Microbiology, 86(20) e01131-20, 2020.10, doi: 10.1128/AEM.01131-20(計画班A02-1と共同)

Nishimura, Y., Otagiri, M., Yuki, M., Shimizu, M., Inoue, J., Moriya, S., and Ohkuma, M. “Division of functional roles for termite gut protists revealed by single-cell transcriptomes” The ISME Journal, 14(10) 2449-2460, 2020.10, doi: 10.1038/s41396-020-0698-z

Takeuchi, M., Kuwahara, H., Murakami, T., Kajitani, R., Toyoda, A., Itoh, T., Ohkuma, M., and Hongoh, Y. “Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut” The ISME Journal, 14(9) 2288-2301, 2020.09, doi: 10.1038/s41396-020-0688-1(公募班本郷Gと共同)

Shirouzu, T., Takamatsu, S., Hashimoto, A., Meeboon, J., and Ohkuma, M. “Phylogenetic overview of the Erysiphaceae based on nrDNA and MCM7 sequences” Mycoscience, 61(5) 249-258, 2020.09, doi: 10.1016/j.myc.2020.03.006

Liou, J.S., Huang, C.H., Ikeyama, N., Lee, A.Y., Chen, I.C., Blom, J., Chen, C.C., Chen, C.H., Lin, Y.C., Hsieh, S.Y., Huang, L., Ohkuma. M., Watanabe, K., Sakamoto, M.Prevotella hominis sp. nov., isolated from human faeces” International Journal of Systematic and Evolutionary Microbiology, 70(8) 4767-4773, 2020.08, doi: 10.1099/ijsem.0.004342

Noda, S., Koyama, F., Aihara, C., Ikeyama, N., Yuki, M., Ohkuma, M., Sakamoto, M.Lactococcus insecticola sp. nov. and Lactococcus hodotermopsidis sp. nov., isolated from the gut of the wood-feeding lower termite Hodotermopsis sjostedtiInternational Journal of Systematic and Evolutionary Microbiology, 70(8) 4515-4522, 2020.08, doi: 10.1099/ijsem.0.004309

Ikeyama, N., Toyoda, A., Morohoshi, S., Kunihiro, T., Murakami, T., Mori, H., Iino, T., Ohkuma, M., Sakamoto, M. “Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov.” International Journal of Systematic and Evolutionary Microbiology, 70(6) 3664-3664, 2020.06, doi: 10.1099/ijsem.0.004215

Sorokin, D.Y., Merkel, A.Y., Messina, E., Yakimov, M.M., Itoh, T., Mesbah, N.M., Wiegel, J., and Oren, A. “Reclassification of the genus Natronolimnobius: proposal of two new genera, Natronolimnohabitans gen. nov. to accommodate Natronolimnobius innermongolicus and Natrarchaeobaculum gen. nov. to accommodate Natronolimnobius aegyptiacus and Natronolimnobius sulfurireducensInternational Journal of Systematic and Evolutionary Microbiology, 70(5) 3399-3405, 2020.05, doi: 10.1099/ijsem.0.004186

Tanizawa, Y., Kobayashi, H., Nomura, M., Sakamoto, M., Arita, M., Nakamura, N., Ohkuma, M., and Tohno, M. “Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage” International Journal of Systematic and Evolutionary Microbiology, 70(5) 3111-3116, 2020.05, doi: 10.1099/ijsem.0.004138

Kobayashi, H., Tanizawa, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., and Tohno, M. “Reclassification of <i>Clostridium diolis</i> Biebl and Spröer 2003 as a later heterotypic synonym of <i>Clostridium beijerinckii</i> Donker 1926 (Approved Lists 1980) emend. Keis et al. 2001″ International Journal of Systematic and Evolutionary Microbiology, 70(4) 2463-2466, 2020.04, doi: 10.1099/ijsem.0.004059

Dekio, I., Sakamoto, M., Suzuki, T., Yuki, M., Kinoshita, S., Murakami, Y., and Ohkuma, M.Cutibacterium modestum sp. nov., isolated from meibum of human meibomian glands, and emended descriptions of Cutibacterium granulosum and Cutibacterium namnetenseInternational Journal of Systematic and Evolutionary Microbiology, 70(4) 2457-2462, 2020.04, doi: 10.1099/ijsem.0.004058

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete Genome Sequence of Blautia producta JCM 1471T” Microbiology Resource Announcements, 9(17) e00141-20, 2020.04, doi: 10.1128/MRA.00141-20

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete Genome Sequence of Flavonifractor plautii JCM 32125T” Microbiology Resource Announcements, 9(17) e00135-20, 2020.04, doi: 10.1128/MRA.00135-20

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete genome sequence of Megamonas funiformis JCM 14723T” Microbiology Resource Announcements, 9(16) e00142-20, 2020.04, doi: 10.1128/MRA.00142-20

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete genome sequence of Collinsella aerofaciens JCM 10188T” Microbiology Resource Announcements, 9(16) e00134-20, 2020.04, doi: 10.1128/MRA.00134-20

Kato, S., Itoh, T., and Ohkuma, M. “Complete Genome Sequence of Athalassotoga saccharophila Strain NAS-01, a Deep-Branching Thermophilic Lineage in the Phylum ThermotogaeMicrobiology Resource Announcements, 9(16) e00322-20, 2020.04, doi: 10.1128/MRA.00322-20

Itoh, T., Miura, T., Sakai, H., Kato, S., Ohkuma, M., and Takashina, T. “Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov.” International Journal of Systematic and Evolutionary Microbiology, 70(3) 1117-1121, 2020.03, doi: 10.1099/ijsem.0.003981

公募班
Yong Guo, Yusuke Takashima, Yoshinori Sato, Kazuhiko Narisawa, Hiroyuki Ohta, Tomoyasu Nishizawa “Mycoavidus sp. Strain B2-EB: Comparative genomics reveals minimal genomic features required by a cultivable Burkholderiaceae-related endofungal bacterium” Applied Environmental Microbiology, 86(18) e01018-20, 2020.09, doi: 10.1128/AEM.01018-20

Takashima, Y., Degawa, Y., Nishizawa, T., Ohta, H., and Narisawa, K. “Aposymbiosis of a Burkholderiaceae-Related Endobacterium Impacts on Sexual Reproduction of Its Fungal Host” Microbes and Environments, 35(2) ME19167, 2020.04, doi: 10.1264/jsme2.ME19167

Shimamori Y, Mitsunaka S, Yamashita H, Suzuki T, Kitao T, Kubori T, Nagai H, Takeda S, Ando H “Staphylococcal Phage in Combination with Staphylococcus epidermidis as a Potential Treatment for Staphylococcus aureus-Associated Atopic Dermatitis and Suppressor of Phage-Resistant Mutants” Viruses, 13(1) 7, 2020.12, doi: 10.3390/v13010007

Kawabata M, Matsuo H, Koito T, Murata M, Kubori T, Nagai H, Tagaya M, Arasaki K “Legionella hijacks the host Golgi-to-ER retrograde pathway for the association of Legionella-Containing vacuole with the ER” PLoS Pathogens, 17(3) e1009437, 2021.03, doi: 10.1371/journal.ppat.1009437

Hyunmin Kim, Tomoko Kubori, Kohei Yamazaki, Mi-Jeong Kwak, Suk-Youl Park, Hiroki Nagai, Joseph P Vogel, and Byung-Ha Oh “Structural Basis for Effector Protein Recognition by the Dot/Icm Type IVB Coupling Protein Complex” Nature Communications, 11(1) 2623, 2020.05, doi: 10.1038/s41467-020-16397-0

Tomoe Kitao, Hiroki Nagai, and Tomoko Kubori “Reversing Conventional and Unconventional Ubiquitination” Frontiers in Cellular and Infection Microbiology, 10(-) 448, 2020.08, doi: 10.3389/fcimb.2020.00448 (Review)

Tomoe Kitao, Kyoichiro Taguchi, Shintaro Seto, Kohei Arasaki, Hiroki Ando, Hiroki Nagai, and Tomoko Kubori “Legionella Manipulates Non-canonical SNARE Pairing Using a Bacterial Deubiquitinase” Cell Reports, 32(10) 108107, 2020.09, doi: 10.1016/j.celrep.2020.108107

W. Miran, D, Naradasu, A. Okamoto “Pathogens electrogenicity as a tool for in-situ metabolic activity monitoring and drug assessment in biofilms” iScience, 24(2) 102068, 2021.02, doi: 10.1016/j.isci.2021.102068

 Y. Tokunou, R. V. Lemos, S. Tsujimura, A. Okamoto, P. Ledezma, S. Freguia “Synechococcus and Other Bloom‐Forming Cyanobacteria Exhibit Unique Redox Signatures” ChemElectroChem, 8(2) 360-364, 2021.01, doi: 10.1002/celc.202001274

 J. Saito, X. Deng, A. Okamoto “Single-Cell Mass Spectroscopic Analysis for Quantifying Active Metabolic Pathway Heterogeneity in a Bacterial Population on an Electrode” Analytical Chemistry, 92(23) 15616-15623, 2020.11, doi: 10.1021/acs.analchem.0c03869

R.V. Lemos, S. Tsujimura, P. Ledezma, Y. Tokunou, A. Okamoto, and S. Freguia “Extracellular electron transfer by Microcystis aeruginosa is solely driven by high pH” Bioelectrochemistry, 137(-) 107637, 2020.09, doi: 10.1016/j.bioelechem.2020.107637

M. Shiibashi, X. Deng, W. Miran, and A. Okamoto “Mechanism of Anaerobic Microbial Corrosion Suppression by Mild Negative Cathodic Polarization on Carbon Steel” Environmental Science & Technology Letters, 7(9) 690-694, 2020.09, doi: 10.1021/acs.estlett.0c00383

S. Hirano, J. Saito, T. Yukawa, D. Sano, A. Okamoto, S. Okabe, M. Kitajima “Improvement of Electrochemical Conditions for Detecting Redox Reaction of K3 [Fe (CN) 6] toward the Application in Norovirus Aptasensor” Electrochemistry, 88(3) 205-209, 2020.05, doi: 10.5796/electrochemistry.20-00017

D. Naradasu, A. Guionet, T. Okinaga, T. Nishihara, A. Okamoto “Electrochemical Characterization of Current Producing Human Oral-pathogens by Whole-Cell Electrochemistry” ChemElectroChem, 7(9) 2012-2019, 2020.05, doi: 10.1002/celc.202000117

E. La Cava, A. Guionet, J. Saito, and A. Okamoto “Involvement of Proton Transfer for Carbon Dioxide Reduction Coupled with Extracellular Electron Uptake in Shewanella oneidensis MR-1″ Electroanalysis, 32(8) 1659-1663, 2020.04, doi: 10.1002/elan.201900686

D. Naradasu, A. Guionet, W. Miran, and A. Okamoto “Microbial current production from Streptococcus mutans correlates with biofilm metabolic activity” Biosensors and Bioelectronics, 162(-) 112236, 2020.04, doi: 10.1016/j.bios.2020.112236

X. Deng, N. Dohmae, A. H. Kaksonen, and A. Okamoto “Biogenic Iron Sulfide Nanoparticles to Enable Extracellular Electron Uptake in Sulfate-Reducing Bacteria” Angewandte Chemie German Edition, 132(15) 6051-6055, 2020.04, doi: 10.1002/ange.201915196 (International Edition; doi: 10.1002/anie.201915196)

S. Zhang, W. Miran, D. Naradasu, S. Guo, and A. Okamoto “A Human Pathogen Capnocytophaga Ochracea Exhibits Current Producing Capability” Electrochemistry, 88(3) 224-229, 2020.04, doi: 10.5796/electrochemistry.20-00021

X. Long and A. Okamoto “Outer membrane compositions enhance the rate of extracellular electron transport via cell-surface MtrC protein in Shewanella oneidensis MR-1″ Bioresource Technology, 320(part A) 124290, 2021.01, doi: 10.1016/j.biortech.2020.124290

X.Deng, J.Saito, A.Kaksonen, A. Okamoto “Enhancement of cell growth by uncoupling extracellular electron uptake and oxidative stress production in sediment sulfate-reducing bacteria” Environment International, 144(-) 106006, 2020.11, doi: 10.1016/j.envint.2020.106006

Tomoya Maeda, Junichiro Iwasawa, Hazuki Kotani, Natsue Sakata, Masako Kawada, Takaaki Horinouchi, Aki Sakai, Kumi Tanabe, Chikara Furusawa “High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coliNature Communications, 11(-) 5970, 2020.11, doi: 10.1038/s41467-020-19713-w

 Yuto Chiba, Sayoko Oiki, Takashi Yaguchi, Syun-ichi Urayama, Daisuke Hagiwara “Discovery of divided RdRp sequences and a hitherto unknown genomic complexity in fungal viruses” Virus Evolution, 7(1) veaa101, 2021.01, doi: 10.1093/ve/veaa101

Syun-ichi Urayama, Nobutaka Doi, Fumie Kondo, Yuto Chiba, Yoshihiro Takaki, Miho Hirai, Yasutaka Minegishi, Daisuke Hagiwara, Takuro Nunoura “Diverged and active partitiviruses in lichen” Frontiers in Microbiology, 11(-) 561344, 2020.09, doi: 10.3389/fmicb.2020.561344

Daigo Nomoto, Tatsuhiko Tsunoda, Hideyuki Shigemori “Effects of clovamide and its related compounds on the aggregations of amyloid polypeptides” Journal of Natural Medicines, 75(2) 299-307, 2021.01, doi: 10.1007/s11418-020-01467-w

Chol Gyu Lee, Yasunori Baba, Ryoki Asano, Yasuhiro Fukuda, Chika Tada, Yutaka Nakai “Identification of bacteria involved in decomposition of lignocellulosic biomass treated with cow rumen fluid by metagenomic analysis” Journal of Bioscience and Bioengineering, 130(2) 137-141, 2020.04, doi: 10.1016/j.jbiosc.2020.03.010

Chol Gyu Lee, Toshiya Iida, Eriko Kunitomo, Kazuhiro Nakaho, Moriya Ohkuma “Soil prokaryotes associated with changing of pathogen density during anaerobic soil disinfestation” Applied Soil Ecology, 155(-) 103632, 2020.11, doi: 10.1016/j.apsoil.2020.103632

李哲揆「土壌中の有機物由来の炭素循環と、有機物施用による植物病害の抑止に関する微生物の研究」日本土壌肥料学会誌 Japanese journal of Soil Science and Plant Nutrition, 91(5) 335-336, 2020.10, doi: 10.20710/dojo.91.5_335

Invited Talks/International meetings

Invited Talks

A01班
佐々文洋,超ハイスループットな微生物の単離を可能とするマイクロデバイス,日本農芸学会2021年度全国大会シンポジウム,20210320,オンライン

重藤真介,ポストコッホ・ラマン技術で見る微生物の種と生態,新学術領域研究「ポストコッホ生態」第1回公開シンポジウム,20201218,オンライン

野村暢彦,細菌集団における細胞不均一性と多様性,日本生物工学会 生物工学Webシンポジウム2020,20200900,オンライン

野村暢彦,教育講演3 21世紀の重要な微生物研究課題「バイオフィルムの理解と制御」,第68回日本化学療法学会総会,20200900,オンライン

野村暢彦,ポストコロナ戦略シリーズ3 「微生物の「会話」から読み解く集団の制御とコロナに負けない健康生活」,バイオインダストリー協会 ポストコロナ戦略シリーズ,20200800,東京

野村暢彦,新奇細菌コミュニケーションシステムの発見と地球生態系における細菌の位置づけ,2020年度山口大学中高温微生物研究センター 環境微生物部門シンポジウム,202012

野村暢彦,デバイスを用いた微生物の動きの見える化技術を未病の見える化に応用できるのか,日本学術振興会 食と未病マーカー委員会,202012,オンライン

野村暢彦,界面活性剤の相乗効果を利用した革新的バイオフィルム制御の開発,電子情報通信学会システムナノ技術に関する特別研究専門委員会主催  第1回研究会「科学技術イノベーションを創成する先進システムナノ技術」,202101,オンライン

野村暢彦,凝集から考える微生物生態,2020年度界面動電現象研究会,202103,オンライン

野村暢彦,集団微生物学としてのバイオフィルム研究 Biofilm and microbial community,第94回日本細菌学会総会 シンポジウム集団微生物学と細菌バイオフィルム研究の前線,202103,オンライン

野村暢彦豊福雅典,尾花望,集団微生物学としてのバイオフィルム研究,第94回日本細菌学会総会 シンポジウム集団微生物学と細菌バイオフィルム研究の前線,202103,オンライン

永沢亮,Andrew S. Utada,野村暢彦,尾花望,Streptococcus mutansバイオフィルム形成における細胞死と細胞外DNA産生,第94回日本細菌学会総会 シンポジウム集団微生物学と細菌バイオフィルム研究の前線,202103

豊福雅典,細菌における多様なMV形成機構,第93回日本生化学会大会,20200914-16,オンライン

豊福雅典,膜小胞を介した細菌間コミュニケーションの研究,日本微生物連盟 野本賞受賞講演,202101,オンライン

豊福雅典,Bacterial Trafficking of Biomolecules Through Membrane Vesicles,Annual meeting of electrokinetic society Japan,202103,オンライン

豊福雅典,メンブレンベシクル形成機構の多様性と普遍性,日本農芸化学会2021年度大会,202103,オンライン

中井亮佑, 草田裕之, 玉木秀幸,培養アプローチで迫る稀少微生物たちの実体,日本農芸化学会2021年度仙台大会,20210321,オンライン

中井 亮佑,とっても小さい放線菌等の実体と新機能,第67回日本放線菌学会学術講演会,20210309,オンライン

中井 亮佑,極地微生物ハンティングのこれまでとこれから,極限環境生物学会 第21回年会・シンポジウム,20201101,オンライン

跡見晴幸,アーキア機能未知遺伝子の機能解明,日本農芸化学会2020年度大会,20210327,オンライン

跡見晴幸,超好熱性アーキアの特異な代謝,バイオインダストリー協会 発酵と代謝研究会 講演会,202103,オンライン

大西 康夫,放線菌研究から細胞の休眠と覚醒のメカニズムに迫る,第60回生命科学夏の学校 ワークショップ,20200829,オンライン

大西 康夫,放線菌の形態分化制御と二次代謝産物生合成に関する研究,日本放線菌学会 大村賞受賞講演,20200910,オンライン

 

A02班

水口 千穂野尻 秀昭,細菌は接合伝達で獲得したプラスミドにどのように「順応」するのか?,日本農芸化学会2021年度大会,20210319,オンライン

野尻 秀昭,接合伝達は細胞に何を起こすのか,(公財)大隅基礎科学創成財団 微生物コンソーシアム第1回全体会,20210316,,オンライン

新谷政己,様々な微生物間におけるプラスミドの伝播現象に影響を及ぼす因子の探索,日本進化学会第22回オンライン大会,20200907,オンライン

新谷政己,どのプラスミドが,どのようなときに,どこからどこに移るのだろうか,2021年度日本農芸化学会大会,20210319,オンライン

桝尾 俊介,高谷 直樹,アミノ酸の新たな利用の可能性~有用ピラジン化合物の生合成と代謝工学~,日本農芸化学会2021年度大会,20210328,オンライン

大津厳生,微生物の硫黄代謝研究から生まれサルファーインデックスについて,第17回高付加価値食品開発のためのフォーラム 日本食品・機械研究会,20190927-0928,帝人アカデミー富士(静岡県裾野市)

松井求,ウイルスの初期進化と高速進化を解き明かす,第43回日本分子生物学会,20201203,オンライン

Shingo Kato,Takashi Itoh,Moriya Ohkuma,Research and resource development of archaea/extremophiles in RIKEN-JCM,生物工学Webシンポジウム2020,20200903,オンライン

 

公募班

青井議輝,分離培養手法の革新に向けて:さみしがり屋だけど人込みは嫌い,日本農芸化学会2021年度仙台大会,20210319,オンライン

加藤節,栄養飢餓による微生物細胞の死,日本農芸化学会2021年度仙台大会,20210320,オンライン

加藤節,1細胞レベルでみる微生物細胞の生死,第93回日本生化学会大会,20200916,オンライン

岡本 章玄,環境や人体に棲むブラック電気細菌,日本農芸化学会2021年度仙台大会,20210321,オンライン

岡本 章玄,ハイスループット電極微生物培養は電気細菌の普遍性を示せるか?,日本農芸化学会2021年度仙台大会,20210320,オンライン

Akihiro Okamoto,Mechanobiological Control of Electron Flow via Transmembrane Electric Wire in Living Bacteria ,MANA,20210302-20210303,茨城県つくば市

岡本 章玄, 「生体における微粒子の機能と制御」多様な細胞外微粒子の生体機能を探る,第58回 日本生物物理学会年会,20200916-18,群馬Gメッセ群馬

前田 智也,岩澤 諄一郎,古澤 力,大規模進化実験で解き明かす大腸菌の薬剤耐性進化における制約,第94回日本細菌学会総会,20210323,オンライン

加藤創一郎,培養困難な微生物たちとそれらを培養したい研究者たち,第67 回日本放線菌学会学術講演会,20210309,オンライン

浦山俊一、二宮章洋、千葉悠斗、池田彩乃、趙彦杰、老木紗予子、萩原大祐,真菌細胞内で“家畜化”されたウイルス,第94回日本細菌学会総会,20210323,オンライン

 

International meetings

A01班

Kohei Semasa, Fumihiro Sassa, Kenshi Hayashi “2D LSPR GAS SENSOR WITH AU/AG CORE-SHELL STRUCTURE COATED BY FLUORESCENT DYES” IEEE SENSORS2020, 20201025-28, Rotterdam, Nederland

Yasuhiro Kusuda, Zhongyuan Yang, Kohei Semasa, Fumihiro Sassa, Kenshi Hayashi “ODOR SOURCE DETECTION WITH HIGH SPEED MULTI GAS SENSING ROBOT SYSTEM USING AUNPS-FLUORESCENT MOLECULAR COUPLING OPT-CHEMICAL LSPR SENSOR” IEEE SENSORS2020, 20201025-28, Rotterdam, Nederland

Lin Chen, Noriko Shiramatsu, Bin Chen, Fumihiro Sassa, Shoichi Sameshima, Tatsuya Seki, Kenshi Hayashi “ULTRA-HIGH SENSITIVE SERS GAS SENSOR TO DETECT GEOSMIN” IEEE SENSORS2020, 20201025-28, Rotterdam, Nederland

Haruyuki Atomi “Studies on coenzyme biosynthesis ~a new lipoyl synthase~” Molecular Biology of Archaea 7 (Zoom symposium), 20201008, Zoom center @Frankfurt, Germany

Haruyuki Atomi “The unique metabolism in Archaea” 2019 International Congress on Metabolic Sciences (ICMS2019), 20191119, Shanghai

Haruyuki Atomi “Studies on coenzyme biosynthesis ~a new lipoyl synthase~” Molecular Biology of Archaea 7 (Zoom symposium), 20201008, Zoom center @Frankfurt, Germany

Tamotsu Kanai, Mehwish Aslam, Ayumi Horiuchi, Jan-Robert Simons, Savyasachee Jha, Haruyuki Atomi “Engineering of the hyperthermophilic archaeon Thermococcus kodakarensis for chitin-dependent hydrogen production” Marine Biotechnology Conference 2019, 20190912, Shimizu

Haruyuki Atomi “Elucidation of the entire CoA biosynthesis pathway in Archaea” 1st Japan-Germany-Switzerland Workshop, 20190911, Tateyama

Haruyuki Atomi “Unique metabolism of the Archaea” 10th International Symposium of Advanced Energy Science, 20190904, Uji

Tamotsu Kanai, Masahiro Yamada, Natsuki Nakada, Mehwish Aslam, Ayumi Horiuchi, Haruyuki Atomi “Genetic characterization of multiple chitinases of the hyperthermophilic archaeon, Pyrococcus chitonophagus” 15th International Congress on Thermomophiles (Thermophiles2019), 20190903, Fukuoka

Takahiro Shimosaka, Kira S Makarova, Eugene V Koonin and Haruyuki Atomi “Identification and Characterization of A Novel Archaeal Dephospho-CoA Kinase in Thermococcus kodakarensis15th International Congress on Thermomophiles (Thermophiles2019), 20190902, Fukuoka

 

 

A02班

Masaki Shintani “New insights of broad host range plasmids belonging to the IncP and PromA groups” Special lecture in Chulalongkorn University, 20210203

F. Vejarano, C. Suzuki-Minakuchi, Y. Ohtsubo, M. Tsuda, K. Okada, H. Nojiri “Diversity and Recruitment History of Catabolic Genes among Nine Carbazole-degrading Bacteria” ASM Microbe online, 20200618, online

Allan DEVANADERA, Chiho SUZUKI-MINAKUCHI, Yuki KASAI, Yoh TAKAHATA, Kazunori OKADA, Hideaki NOJIRI “The Benzene-degrading Nitrate-reducing Azoarcus sp. DN11 Employs Hydroxylation Route as Initial Reaction in Anaerobic Benzene Degradation Pathway”  ASM Microbe online, 20200618, online

Mori M, Nara S, Su’etsugu, M, Kimbara K, Shintani M., Novel plasmids were isolated from natural environmental samples using Replication-Cycle Reaction (RCR), FEMS 2020 Online Conference, 20201029, online

Tokuda M, Suzuki H, Yuki M, Ohkuma M, Kimbara K, Shintani M. “Plasmids with different nucleotide compositions showed different host ranges” FEMS 2020 Online Conference, 20201029, online

Yamamoto Y, Hayakawa M, Moriuchi R, Dora H, Kimbara K, Shintani M., “Broad host range IncPromA group plasmids were widely distributed around different environments” FEMS 2020 Online Conference, 20201029, online

Hiroshi Kanazawa, Sayoko Ozaki, Shunsuke Masuo, Naoki Takaya “Degradation of riboflavin and lumichrome by actinobacteria consortium” IUMS, 202010, Degyeon

Yungmi You, Norifumi Maeda, Yuki Doi, Naoki Takaya “Degradation Mechanisms for Degrading Folic Acid by Environmental Bacteria” IUMS, 202010, Degyeon

Hisayoshi Hayashi “Field Research Challenging for the Sustainable Development in the 21st Century”  6th International Conference on Agricultural and Biological Sciences (ABS 2020), 20200824-26, online

 

公募班

Akihiro OKAMOTO, Extracellular Electron Transport Mechanisms by Sulfate-reducing Bacteria, Korean Society for Biotechnology and Bioengineering, 20201021-23, Korea

Awards

A01班

佐々文洋, 化学/生物学分析の為のBioMEMSと応用ロボット研究, 文部科学大臣表彰 若手科学者賞, 202104, 文部科学省, 日本

平山智弘、八幡志央美、芹田龍郎、風間春香、森浩二、高久洋暁、野村暢彦、八幡穣, 2021年度大会 トッピクス賞, 202103, 日本農芸化学会, 日本

張譯云、高部響介、下段千尋、野村暢彦、八幡穣, 2021年度大会 トッピクス賞, 202103, 日本農芸化学会, 日本

豊福雅典, 膜小胞を介した細菌間コミュニケーションの研究, 日本微生物学連盟 第1回野本賞, 202006, 日本微生物学連盟, 日本

道盛 裕太、三輪 有哉、下坂 天洋、濱北 宗太郎、井崎 力久、跡見 晴幸, 超好熱性アーキアにおける原始的光呼吸経路の同定, 極限環境生物学会発表賞, 202011, 極限環境生物学会, 日本

佐藤喬章、蜂須賀真一、跡見 晴幸, 超好熱性アーキアにおけるリポ酸生合成遺伝子の同定, 2020年度大会優秀発表賞, 202003, 日本農芸化学会, 日本

大西康夫, 放線菌の形態分化制御と二次代謝産物生合成に関する研究, 大村賞(学会賞), 202009, 日本放線菌学会, 日本

 

A02班

三浦 隆匡、島村 麻美子、内野 佳仁、山副 敦司、坂本 光央、関口 勇地、成田 興司、亀山 恵司、久田 貴義、笠原 堅、寺内 淳、川﨑 浩子, ヒトマイクロバイオーム解析のためのMock Communityの開発 “Development of mock community for human microbiome research”, トピックス賞, 202003, 日本農芸化学会, 日本

竹内 真理子、桑原 宏和、村上 匠、梶谷 嶺、豊田 敦、伊藤 武彦、大熊 盛也本郷 裕一, 独立にゲノム縮小したシロアリ腸内原生生物細胞表面共生 Desulfovibrio 属細菌の適応進化, 若手発表賞, 201911, 日本共生生物学会第3回大会, 日本

 

公募班

岡本章玄, 全米医学アカデミー(NAM)「Healthy Longevity Grand Challenge(HLGC)」The Catalyst Awards, 202010, 全米医学アカデミー(NAM), USA

李哲揆, 土壌中の有機物由来の炭素循環と、有機物施用による植物病害の抑止に関する微生物の研究, 第38回土壌肥料学会奨励賞, 202009, 日本土壌肥料学会, 日本

Books

久能 樹, 高橋晃平, 野村暢彦, Andrew S. Utada「耐性菌の発生を防ぎつつバイオフィルムを効率的に除去する 界面活性剤組成物の開発」最近の技術やニュースの照会, 日本バイオフィルム学会 ニュースレター, 共著, 日本語

野村暢彦「「支配されているのはどっち?」の問いかけに対するコメント」令和2年冬号第13号 ブナの森新聞, ブナの森調剤薬局, 単著, 日本語

久保武、五十嵐亮二、山本達也、久能樹、野村暢彦「新規バイオフィルムコントロール剤 バイオフィルムに対する作用メカニズムとROモジュールでの評価」月刊「クリーンテクノロジー」3月号 56-59, 日本工業出版, 共著, 日本語

高橋晃平、久能 樹、野村暢彦、Andrew S. Utada「バイオサーファクタントによるバイオフィルム除去および形成抑制」バイオサイエンスとインダストリー 79(2) 90-93, JBA, 共著, 日本語

野暢彦「特集 ERATO野村集団微生物制御プロジェクトについて~細菌の集団形成と社会性の創発~(前編)
「特集によせて」」 生物工学会誌 98(6) 292-313, 単著, 日本語

野村暢彦「特集 ERATO野村集団微生物制御プロジェクトについて~細菌の集団形成と社会性の創発~(後編)
「特集によせて」」 生物工学会誌 98(7) 346-367, 単著, 日本語

久能 樹、山本達也、Andrew S. Utada、野村暢彦「Leptothrix属細菌の分泌ナノ繊維を介した生存戦略」 バイオサイエンスとインダストリー 78(4) 329-331, 共著, 日本語

田伏義彦、尾花望、野村暢彦「クオラムセンシングによるバイオフィルムの不均一性と形態制御」 BACTERIAL ADHERENCE & BIOFILM, 共著, 日本語

野村暢彦 醸造の事典, 北本勝ひこ編(代表), 分担執筆, 日本語

草田裕之、玉木秀幸「微生物間相互作用の遮断と抗生物質耐性を紐付ける未知微生物群ならびに両機能性酵素の発見」 日本生物工学誌, 4, 共著, 日本語

玉木秀幸「未知の微生物を””培養””して新たな生物機能を探る」 バイオサイエンスとインダストリー, 2, 共著, 日本語

大津厳生「第2章第3節硫黄でマイクロバイオームを知る:腸内・口腔内フローラ診断に役立つツール」ヒトマイクロバイオーム Vol. 2 解析技術の進展とデータ駆動型・ターゲット機能型研究最前線, 株式会社エヌ・ティー・エス, 共著, 日本語

高野淑識、加藤真悟「海底下の試料(地球深部の堆積物および岩石)」ぶんせき, 314-319, 日本語

坂本 光央「第4章 常在菌の分離培養・分類」,第1編 マイクロバイオームにおける解析技術とデータ分析,ヒトマイクロバイオーム Vol.2 ~解析技術の進展とデータ駆動型・ターゲット機能型研究最前線~, 103-109, 分担執筆, 日本語

X. Deng, A. Okamoto, “Exrtacellular Electron Uptake Mechanisms in Sulfate-Reducing Bacteria”, Electron-based Bioscience and Biotechnology, 43-59, 共著, 英語

Patents

A01班

佐々 文洋, 武居 修, 茂木 一「操作装置及び操作方法」出願番号:特願2020-102019(20200612出願)
野村暢彦、久能 樹、Utada AS、山本達也、杉本真也、小野絵理香、金城雄樹「フィラメントの製造方法及びフィラメント」出願番号:特願2020-092630(20200527出願)
野村暢彦、(ウタダ、アンドリュー、シンイチ)、(ダウイン、バク、ヴ、ヤン)、川口敦史、リ シャウジェ「消毒組成物、洗浄組成物、防汚組成物、ウイルス不活性化組成物および非殺菌性組成物並びにバイオフィルムの除去および形成抑制用組成物」出願番号:PCT/JP2020/ 37661(20201002出願)
豊福雅典野村暢彦、臼倉雄紀「対象物質が封入された膜小胞の製造方法」出願番号:特願2020-188606(20201112出願) 出願人:国立大学法人筑波大学
八幡穣、八幡志央美、岡野千草、野村暢彦「補正パラメータ設定方法及びデータ補正方法」出願番号:特願2021-019344(20210209出願) 出願人:国立大学法人筑波大学
八幡穣、八幡志央美、平山智弘、野村暢彦、森浩二、芹田龍郎、高久洋暁「細胞の表現型と自家蛍光の対応データ作成方法及びデータ使用方法」出願番号:特願2021-029169(20210225出願) 出願人:国立大学法人筑波大学、独立行政法人製品評価技術基盤機構

草田裕之玉木秀幸、有田正規「耐熱性胆汁酸塩加水分解酵素および経口組成物」特願2020-143314(20200827出願)出願人:国立研究開発法人 産業技術総合研究所,National Institute of Advanced Industrial Science and Technology

公募班

岡本章玄「プローブ分子探索装置、及び、プローブ分子の探索方法」出願番号:2020-096780(20200603出願), 出願人:国立研究開発法人物質・材料研究機構
岡本章玄「検出装置、及び、データ収集方法」出願番号:PCT/JP2020/19026(20200512出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄「診断装置、及び、プログラム」出願番号:2020-070820(20200410出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄、グイヨネ アレクシ、ナラダス ディビア「薬剤感受性測定方法、及び、薬剤感受性測定装置」出願番号:PCT/JP2020/015037(20200401出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄「測定装置、測定方法、プログラム、及び、バイオセンサ」出願番号:PCT/JP2020/12673(20200401出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄「ゲノム解析方法」出願番号:2020-20826(20201226出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄「細胞で産生された膜小胞に由来する塩基配列を解析する方法、その装置、及び、そのプログラム」出願番号:2020-187670(20201111出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄「ウィルス核酸の測定方法、ウィルス核酸測定装置、プログラム、センサ、積層電極、及び、電極付き基板」出願番号:2020-172265(20201013出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄「感受性測定装置、及び、感受性測定方法」出願番号:2020-127100(20200728出願)出願人:国立研究開発法人物質・材料研究機構
岡本章玄、李 偉鵬「電気細菌回収用の複合粒子、電気細菌回収用の複合粒子の製造方法、及び、電気細菌の回収方法」出願番号:2020-127101(20200728出願)出願人:国立研究開発法人物質・材料研究機構
出口茂、布浦拓郎浦山俊一「二本鎖RNAの断片化方法およびその利用」出願番号:15/767832 登録番号10894981 登録日20210119(US patent)

Outreach activity etc

中井亮佑, 長沼毅, 微生物の世界に新しい「門」が誕生!砂漠で見つけた超すごいやつ (講談社ブルーバックス・ウェブサイト)

跡見晴幸, The Extremes of Life: Microbes and Their Diversity,The Extremes of Life: Microbes and Their Diversity, 随時開催, 英語, EdX Online Course, ネット配信
布浦拓郎, 生物学の常識(教科書)に挑む(極限)環境生物研究, 関東理科研究発表会神奈川大会, 20191122, 日本語
新谷政己, 遺伝子組換えとゲノム編集の基礎と応用 ~微生物の研究から~, 夢・化学-21 化学への招待 高校生のための化学講座 「ゲノム編集」 〜遺伝情報を思いのままに書き換える画期的な技術〜, 20201212オンライン開催(日本化学会東海支部主催)

松井求, 進化学に生きる, 最先端科学プログラム, 20210307オンライン開催, (早稲田塾主催)

加藤真悟, 環境微生物学概論 〜古地磁気と微生物って関係あるの?〜, 地磁気・古地磁気・岩石磁気 夏の学校, 20200907オンライン開催
増田幸子, Long-read Metagenomics of the Plant Microbiome using the PacBio Sequel(植物共生微生物のロングリードメタゲノム解析), PacBio Webinar series, 20200909, Tomy digital biology company, Pacific Biosciences, 英語, 横浜

青井議輝, 環境中に膨大に存在する未知なる微生物の可能性, 20201207, 広島県立尾道北高校(出張授業)

繁森英幸, 生物の不思議『なんでだろう?』を化学する, 20201117オンライン開催, 筑波大学附属坂戸高等学校(出張授業)

繁森英幸, 生物の不思議『なんでだろう?』を化学する, 20201220オンライン開催, 兵庫県立洲本高等学校(出張授業)

繁森英幸, コーヒーを飲めば認知機能はOK!?, Coffee Break, 98, 32-33, 202009

浦山俊一, 天然のウイルスを使った微生物の”調和的”な活性化(生物工学会誌)

研究成果2019年度

Research articles/Reviews

A01班

Fumihiro Sassa, Gokul Chandra Biswas, and Hiroaki Suzuki “Microfabricated electrochemical sensing devices” Lab on a Chip, 20(8) 1358-1389, 2020.02, doi: 10.1039/C9L01112A

Mitsuru Yasuda, Norio Takeshita, and Shinsuke Shigeto “Inhomogeneous Molecular Distributions and Cytochrome Types and Redox States in Fungal Cells Revealed by Raman Hyperspectral Imaging Using Multivariate Curve Resolution-Alternating Least Squares” Analytical Chemistry, 91(19) 12501-12508, 2019.10, doi: 10.1021/acs.analchem.9b03261

Ami Matsuda, Naoko Sakaguchi, and Shinsuke Shigeto “Can cells maintain their bioactivity in ionic liquids? A novel single‐cell assessment by Raman microspectroscopy” Journal of Raman Spectroscopy, 50(-) 768-777, 2019.06, doi: 10.1002/jrs.5579

Yutaka Yawata, Tatsunori Kiyokawa, Yuhki Kawamura, Tomohiro Hirayama, Kyosuke Takabe, Nobuhiko Nomura “Intra- and Interspecies Variability of Single-Cell Innate Fluorescence Signature of Microbial Cell” Applied and Environmental Microbiology, 85(18)  e00608-19, 2019.09, doi: 10.1128/AEM.00608-19

Tatsuki Kunoh, Kana Morinaga, Shinya Sugimoto, Shun Miyazaki, Masanori Toyofuku, Kenji Iwasaki, Nobuhiko Nomura, Andrew S. Utada “Polyfunctional nanofibril appendages mediate attachment, filamentation, and filament adaptability in Leptothrix cholodniiACS Nano,  14(5) 5288-5297, 2019.12, doi: 10.1021/acsnano.9b04663

Yousuke Kikuchi, Nozomu Obana, Masanori Toyofuku, Noriyuki Kodera, Takamitsu Soma, Toshio Ando, Yoshihiro Fukumori, Nobuhiko Nomura, Azuma Taoka “Diversity of physical properties of bacterial extracellular membrane vesicles revealed through atomic force microscopy phase imaging” Nanoscale, 12(14) 7950-7959, doi: 10.1039/C9NR10850E

Hideyuki Tamaki “Cultivation Renaissance in the Post-Metagenomics Era: Combining the New and Old” Microbes and Environments, 34(2) 117-120, 2019.06, doi: 10.1264/jsme2.ME3402rh

Kyota Mitsuyama, Takeaki Tezuka, Yasuo Ohnishi “Identification and Characterization of a Cell Wall Hydrolase for Sporangiospore Maturation in Actinoplanes missouriensisJournal of Bacteriology, 201(24) e00519-19, 2019.09, doi: 10.1128/JB.00519-19

Takeaki Tezuka, Daisuke Nakane, Tomohiro Kimura, Yasuo Ohnishi “Preparation of Actinoplanes missouriensis Zoospores and Assay for Their Adherence to Solid Surfaces” Bio-protocol, 9(24) e3458, 2019.12, doi: 10.21769/BioProtoc.3458

Yuichiro Hashiguchi, Takeaki Tezuka, Yasuo Ohnishi “Involvement of three FliA-family sigma factors in the sporangium formation, spore dormancy and sporangium dehiscence in Actinoplanes missouriensisMolecular Microbiology, 113(6) 1170-1188, 2020.02, doi: 10.1111/mmi.14485

Bungonsiri Intra, Watanalai Panbangred, Yuki Inahashi, Akira Také, Mihoko Mori, Satoshi Ōmura, Atsuko MatsumotoMicromonospora pelagivivens sp. nov., a new species of the genus Micromonospora isolated from deep-sea sediment in Japan” International Journal of Systematic and Evolutionary Microbiology, 70(5) 3069-3075, 2020.03, doi: 10.1099/ijsem.0.004136

A02班

Felipe Vejarano, Chiho Suzuki-Minakuchi, Yoshiyuki Ohtsubo, Masataka Tsuda, Kazunori Okada, Hideaki Nojiri “Complete genome sequence of Thalassococcus sp. strain S3, a marine Roseobacter clade member capable of degrading carbazole” Microbiology Resource Announcements, 8(28) e00231-19, 2019.07, doi: 10.1128/MRA.00231-19

Enock Mpofu, Joydeep Chakraborty, Chiho Suzuki-Minakuchi, Kazunori Okada, Toshiaki Kimura, Hideaki Nojiri “Biotransformation of monocyclic phenolic compounds by Bacillus licheniformis TAB7″ Microorganisms, 8(1) E26, 2019.12, doi: 10.3390/microorganisms8010026

Yuna Miyoshi,Jo Okada, Tmotaka Urata, Masaki Shintani, Kazuhide Kimbara “A rotational slurry bioreactor accelerates biodegradation of A-fuel in oil-contaminated soil even under low temperature conditions” Microorganisms, 8(2) E291, 2020.02, doi: 10.3390/microorganisms8020291

Shunsuke Masuo, Yusuke Tsuda, Tomohito Namai, Hajime Minakawa, Ryosuke Shigemoto, Naoki Takaya “Enzymatic Cascade in Pseudomonas that Produces Pyrazine from α-Amino Acids” ChemBioChem, 21(3) 353-359, 2019.11, doi: 10.1002/cbic.201900448

Hiroshi Kanazawa, Sayoko Ozaki, Yuki Doi, Shunsuke Masuo, Naoki Takaya “Symbiotic riboflavin degradation by Microbacterium and Nocardioides bacteria” Bioscience Biotechnology and Biochemistry, 84(5) 1056-1061, 2020.01, doi: 10.1080/09168451.2020.1715783

Motomu Matsui and Wataru Iwasaki “Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction” Systematic Biology, 69(2) 265-279, 2019.08, doi: 10.1093/sysbio/syz049

Nattakorn Kuncharoen, Takuji Kudo, Masahiro Yuki, Moriya Ohkuma, Auttaporn Booncharoen, Somboon Tanasupawat “Micromonospora musae sp. nov., an endophytic actinomycete isolated from roots of Musa species” Systematic and Applied Microbiology, 42(6) 126060, 2019.11, doi: 10.1016/j.syapm.2019.126020

Nattaporn Klykleung, Masahiro Yuki, Takuji Kudo, Moriya Ohkuma, Wongsakorn Phongsopitanun, Pattama Pittayakhajonwut, Somboon Tanasupawat “Nonomuraea phyllanthi sp. nov., an endophytic actinomycete isolated from the leaf of Phyllanthus amarusArchives of Microbiology, 202(1) 55-61, 2020.01, doi: 10.1007/s00203-019-01717-w

Pawina Kanchanasin, Masahiro Yuki, Takuji Kudo, Moriya Ohkuma, Nattakorn Kuncharoen, Wongsakorn Phongsopitanun, Somboon Tanasupawat “Streptomyces bauhiniae sp. nov., isolated from tree bark of Bauhinia variegata Linn. in Thailand” International Journal of Systematic and Evolutionary Microbiology, 70(1) 228-233, 2020.01, doi: 10.1099/ijsem.0.003743

Mitsuo Sakamoto, Nao Ikeyama, Yusuke Ogata, Wataru Suda, Takao Iino, Masahira Hattori, ​Moriya OhkumaAlistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.” International Journal of Systematic and Evolutionary Microbiology, 70(1) 473-480, 2020.01, doi: 10.1099/ijsem.0.003778

Mitsuo Sakamoto, Nao Ikeyama, Atsushi Toyoda, Takumi Murakami, Hiroshi Mori, Takao Iino, Moriya OhkumaDialister hominis sp. nov., isolated from human faeces” International Journal of Systematic and Evolutionary Microbiology, 70(1) 589-596, 2020.01, doi: 10.1099/ijsem.0.003797

Yoshiaki Maejima, Takao Iino, Yusuke Muraguchi, Kohei Fukuda, Moriya Ohkuma, Tomohiro Suzuki, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Masaki Shintani “Chryseotalea sanarue gen. nov., sp. nov., a member of the family Cytophagaceae, isolated from a brackish lake in Hamamatsu Japan” Current Microbiology, 77(2) 306-312, 2020.02, doi: 10.1007/s00284-019-01823-4

Nattaporn Klykleung, Masahiro Yuki, Takuji Kudo,  Moriya Ohkuma, Wongsakorn Phongsopitanun, Pattama Pittayakhajonwut, Somboon Tanasupawat “Microbispora catharanthi sp. nov., a novel endophytic actinomycete isolated from the root of Catharanthus roseusInternational Journal of Systematic and Evolutionary Microbiology, 70(2) 964-970, 2020.02, doi: 10.1099/ijsem.0.003858

Takao Iino, Shigeru Kawai, Masahiro Yuki, Itaru Dekio, Moriya Ohkuma, Shin Haruta “Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring” International Journal of Systematic and Evolutionary Microbiology, 70(2) 1117-1121, 2020.02, doi: 10.1099/ijsem.0.003888

Yusuke Ogata, Mitsuo Sakamoto, Moriya Ohkuma, Masahira Hattori, Wataru Suda “Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male” Microbiology Resource Announcements, 9(7) e01543-19, 2020.02, doi: 10.1128/MRA.01543-19

Shingo Kato, Miho Hirai, Moriya Ohkuma, Katsuhiko Suzuki “Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics” PLoS ONE, 14(11) e0224888, 2019.11, doi: 10.1371/journal.pone.0224888

Shingo Kato, Takashi Itoh, Masahiro Yuki, Mai Nagamori, Masafumi Ohnishi, Katsuyuki Uematsu, Katsuhiko Suzuki, Tomonori Takashina, Moriya Ohkuma “Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring” The ISME Journal, 13(10) 2465-2474, 2019.10, doi: 10.1038/s41396-019-0447-3

Nattakorn Kuncharoen, Takuji Kudo, Masahiro Yuki, Moriya Ohkuma, Pattama Pittayakhajonwut, Somboon Tanasupawat “Micromonospora radicis sp. nov., isolated from roots of VAzadirachta indica var. siamensis Valenton, and reclassification of Jishengella zingiberis as Micromonospora zingiberis comb. nov.” International Journal of Systematic and Evolutionary Microbiology, 69(9) 2884-2891, 2019.09, doi: 10.1099/ijsem.0.003574

Sineenath Kunthiphun, Thippawan Wattanagonniyom, Rikiya Endoh, Masako Takashima, Moriya Ohkuma, Somboon Tanasupawat, Ancharida Savarajara “Heterocephalacria mucosa sp. nov., a new basidiomycetous yeast species isolated from a mangrove forest in Thailand, International Journal of Systematic and Evolutionary Microbiology, 69(9) 2823-2827, 2019.09, doi: 10.1099/ijsem.0.003562

Akira S. Hirao, Ryosuke Imai, Rikiya Endoh, Moriya Ohkuma, Yousuke Degawa “Draft Genome Sequence of Novel Metschnikowia sp. Strain JCM 33374, a Nectar Yeast Isolated from a Bumblebee” Microbiology Resource Announcements, 8(37) e00704-19, 2019.09, doi: 10.1128/MRA.00704-19

Shingo Kato, Shinsaku Nakano, Mariko Kouduka, Miho Hirai, Katsuhiko Suzuki, Takashi Itoh, Moriya Ohkuma, Yohey Suzuki “Metabolic Potential of As-yet-uncultured Archaeal Lineages of Candidatus Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits” Microbes and Environments, 34(3) 293-303, 2019.09, doi: 10.1264/jsme2.ME19021

International meetings/Invited talks

Invited talks

A01班

佐々文洋,超ハイスループットな微生物の単離を可能とするマイクロデバイス,日本農芸化学会2020年度大会,20200328,福岡

重藤真介,微生物中の分子からの手紙―ラマンスペクトル―を読み解く,日本農芸化学会2020年度大会,20200328,福岡

重藤真介,ポストコッホ時代の微生物を観る、採る,新学術領域「ポストコッホ生態」キックオフシンポジウム,20190926,つくば

重藤真介,ラマンデータ解析と微生物研究への展開,第13回バイオ関連化学シンポジウム,20190905,仙台

重藤真介,微生物のラマン分光で見えるもの:細胞内代謝物から細胞外微粒子まで,微生物ウィーク,20190727,東京

徳納吉秀、野村 暢彦豊福 雅典,鉄還元細菌由来メンブレンベシクルを介した緑膿菌の細胞外電子移動,日本農芸化学会2020年度大会,20200300,福岡

野村暢彦,多様性を基盤にした微生物研究の最前線, 日本農芸化学会2020年度大会,20200300,福岡

Besuyaku, S., Katou, S., Takebayashi, Y., Sakakibara, H., Nomura, N., Fukuda, H.,PCP Award: Salicylic Acid and Jasmonic Acid Pathways are Activated in Spatially Different Domains Around the Infection Site During Effector-Triggered Immunity in Arabidopsis thaliana第61回日本植物生理学会(受賞講演),20200300,国内

豊福雅典,Bacterial membrane vesicle formation through cell death,日本農芸化学会2020年度大会,20200300,福岡

豊福雅典,微生物が放出する多様なベシクル,高分子と水・分離に関する研究会および2019年度界面動電現象研究会,20200300,国内

兼松周作、豊福雅典野村暢彦,緑膿菌の細胞集団内に出現するスフェロプラスト状細胞の解析,第54回緑膿菌感染症研究会,20200200,国内

菊池 洋輔、市中 佑樹、豊福 雅典、尾花 望、野村 暢彦、田岡 東,高速AFMの位相モードを用いた細菌表面物性の生細胞イメージング,第93回日本細菌学会総会,20200200,名古屋

兼松周作、豊福雅典野村暢彦,細胞集団中に出現するペプチドグリカンの分解された細胞の解析,第93回日本細菌学会総会,20200200,名古屋

豊福雅典,MV形成機構におけるパラダイムシフトとその応用,第93回日本細菌学会総会,20200200,名古屋

野村暢彦,細胞が放つ細胞外膜粒子(メンブレンべシクル(MV)),JST CREST「細胞外微粒子に起因する生命現象の解明とその制御に向けた基盤技術の創出」2019年度領域会議,20200100,国内

野村暢彦,健康・食・環境に関わる微生物制御技術の新展開,第36回JBDAバイオベンチャーフォーラム,20191200,国内

野村暢彦,課題創造学,筑波大学STEAMリーダーシッププログラム講座,20191200,国内

豊福雅典,細菌の生き様を捉える,生化学若い研究者の会,20191109,新潟

Ito N, Obana N, Watanabe H,  Inaba. T, Miyano Y, Nomura N,Metal corrosion by a marine isolated bacterium in response to environmental changes,EAST ASIA & PASIFIC AREA CONFERENCE,20191100,国内

野村暢彦,食・健康・環境にかかわる微生物の制御を目指して ~微生物も群れて会話する~,広島醗酵会・日本技術士会,20191100,国内

野村暢彦,微生物がつくる膜粒子(MV) 〜MVの形成機構と機能〜,日本油化学会オレオマテリアル部会 第三回オレオマテリアル交流会,20191100,国内

野村暢彦,サステイナブルな社会へ向けた微生物の役割と可能性,住友重機械工業 基調講演,20191100,国内

野村暢彦,一細胞~集団における生体機能の可視化の最前線—バイオフィルムから生命科学分野まで—,花王株式会社講演,20191100,国内

Yutaka Yawata, Kyosuke Takabe, Nobuhiko Nomura,Single-Cell Innate Fluorescence Analysis by Confocal Microspectroscopy,日本顕微鏡学会第62回シンポジウム,20191100,

豊福雅典,細菌のメンブレンベシクル形成機構と機能,第10回愛媛微生物学ネットワーク(NAME),20191019, 国内, 愛媛

野村暢彦,微生物も群れて会話する〜単細胞と不均一性〜,関東非線形非平衡バイオソフトマターセミナー,20190700,国内

野村暢彦,生体内小分子はどのように細胞間を移動しているのだろうか?~微生物間コミュニケーションの新たな展開~,微生物ウィーク2019,20190701,東京

豊福雅典,ベシクルを介した細菌の化学コミュニケーション,第14回化学生態研究会,20190628-29, 北海道

中井亮佑、玉木秀幸,単離培養から紐解く稀少微生物たちの実態と多様性,日本農芸化学会2020年度大会,20200328,福岡

中井亮佑,稀少微生物たちの実態と新機能を探る,第14回 札幌微生物勉強会,20190906,札幌

玉木秀幸,未知の微生物を”培養”して新たな生物機能を探る,BioJapan2019 バイオインダストリー大賞・奨励賞受賞講演会,20191009,横浜

跡見晴幸,アーキア機能未知遺伝子の機能解明,日本農芸化学会2020年度大会,20200327,福岡

A02班

新谷政己,プラスミドによる複合微生物系の制御を目指して ~複合微生物系におけるプラスミドの動態~ 第71回日本生物工学会大会,20190917,岡山

新谷政己,環境中を真に伝播しているプラスミドの同定とその伝播経路の解明に向けて,2019年度(令和元年度)国立遺伝学研究所 研究会,20190820,国立遺伝学研究所講堂,静岡

新谷政己, 環境中の微生物群集内における プラスミド伝播の実態の解明に向けて, 微生物ウイーク2019 企画シンポジウム, 20190726, 国内会議 , 東京

野尻秀昭,接合伝達性プラスミドの二面性~遺伝情報の保存装置と進化駆動装置~,2019年度(令和元年度)国立遺伝学研究所 研究会,20190819,国立遺伝学研究所講堂,静岡

尾崎紗代子、金澤拓史、土肥裕希、桝尾俊介、高谷直樹,土壌微生物によるリボフラビンの生分解機構の解明,日本農芸化学会2020年度大会,20200326,福岡

高谷直樹,ポストコッホ生態が目指すところ,日本農芸化学会2020年度大会,20200328,福岡

高谷直樹,ポストコッホ生態が目指すところ,新学術領域「ポストコッホ生態」キックオフシンポジウム,20190926,つくば

松井求、岩崎渉,微生物の機能で生態系を現わす新たな情報学の手法,日本農芸化学会2020年度大会,20200328,福岡

松井求、岩崎渉,Graph Splitting法が解き明かす初期進化と高速進化,日本ゲノム微生物学会第14回年会,20200307,名古屋

山内駿、薄井光生、山口尚人、<u”>岩崎渉,新規有用遺伝子はどのように獲得されるのか?放線菌における「別リーディングフレーム」のゲノム進化解析,第42回日本分子生物学会年会,20191206,福岡

松井求, 微生物情報が描く生態系への挑戦, 新学術領域「ポストコッホ生態」キックオフシンポジウム, 20190926, つくば

松井求、岩崎渉,グラフに基づく新たな系統解析手法で隠れた遠距離進化を発掘する,日本進化学会第21回大会,20190808,札幌

加藤 真悟,極限環境下の「鉄」にまつわる微生物生態学,極限環境生物学会2019年度(第20回)年会,20191117,京都

雪 真弘、大熊 盛也,難培養微生物のシングルセルゲノム解析,第52回日本原生生物学会大会,20191027,水戸

加藤真悟,深海底の熱水性硫化鉱物を「食べる」化学合成生態系,日本地球化学会第66回年会,20190919,東京

雪 真弘、大熊 盛也,シロアリ腸内原生生物と細胞内・表面共生細菌間の相互作用,日本微生物生態学会第33回大会,20190913,甲府

加藤 真悟、小笠原 綾香、伊藤 隆、 酒井 博之、雪 真弘、高品 知典、大熊 盛也,好熱好酸性ナノアーキアの共培養系から探るアーキア間相互作用,日本微生物生態学会第33回大会,20190913,甲府

 

International meetings

A01班

Tsung-Han Liu, Ken-ichi Yuyama, Takato Hiramatsu, Naoki Yamamoto, Eri Chatani, Hiroshi Miyasaka, Teruki Sugiyama, and Hiroshi Masuhara, Promotion of amyloid fibrillation by femtosecond laser irradiation, The 29th International Conference on Photochemistry, 20190725, Colorado, USA

Shinsuke Shigeto and Shogo Toda, Infrared electroabsorption spectroscopy of nanoconfined water, 10th International Conference on Advanced Vibrational Spectroscopy, 20190712, Auckland, New Zealand

Takabe K, Nomura N, Yawata Y, Construction of Single-cell analysis method for autofluorescence signatures in biofilm, The 31st Annual Meeting of the Thai Society for Biotechnology and International Conference, 20191100, 国際会議

Iwamoto M, Masuo S, Nomura N, Betsuyaku S, Functional analysis of the phytoalexin synthetic enzyme gene PAD3 in Arabidopsis thaliana, The 31st Annual Meeting of the Thai Society for Biotechnology and International Conference, 20191100, 国際会議

Soma T, Yamamoto T, Obana N,  Nomura N, Toyofuku M, DNA transfer via membrane vesicles in Bacillus subtilis, The 31st Annual Meeting of the Thai Society for Biotechnology and International Conference, 20191100, 国際会議

Kunoh T, Morinaga K, Sugimoto S, Toyofuku M, Nomura N,  Utada AS., Leptothrix nanofibril appendages mediate attachment, filamentation, and filament adaptability, The 31st Annual Meeting of the Thai Society for Biotechnology and International Conference, 20191100, 国際会議

Nobuhiko Nomura, Microbial Control Ver.3.0, The 31st Annual Meeting of the Thai Society for Biotechnology and International Conference, 20191100, 国際会議

Nobuhiko Nomura, Biofilms and membrane vesicles, ASBA Asian association of synthetic biology, 20191000, 国際会議

Masanori Toyofuku, How do bacteria “really” communicate?, Marine Biotechnology Conference 2019, 20190709-13, Shizuoka, JAPAN

Haruyuki Atomi “Elucidation of the entire CoA biosynthesis pathway in Archaea” 1st Japan-Germany-Switzerland Workshop for Enzyme Technology and Bioprocess Development, 20190911, Tateyama, JAPAN

Haruyuki Atomi “The unique metabolism in Archaea” 2019 International Congress on Metabolic Sciences (ICMS2019), 20191119, Shanghai, CHINA

A02班

Hibiki Kawano, Tomomi Ueda, Chiho Suzuki-Minakuchi, Kazunori Okada, Pseudomonas resinovorans CA10dm4 shows the novel trait “plasmid-insensitivity”, ASM Microbe 2019, 20190623, San Francisco, USA

Hideaki Nojiri, Pseudomonas resinovorans CA10dm4 shows insensitivity to various plasmids: Its role in the host genome evolution, International Congress of the Malaysian Society for Microbiology 2019, 20190000,

Moriya Ohkuma, Single-cell genomics of termite-gut symbionts, Okinawa Institute of Science and Technology Graduate University (OIST) Mini-Symposium “Ecology and Evolution of Termite Gut Microbes”, 20191200, Onna-son, JAPAN

Moriya Ohkuma, Cultured microbial resources and single-cell genomics of yet-uncultured for integrated symbiology, RIKEN-Japan Society of Symbiosis Joint Symposium – Toward applied symbiosis biology, 20191100, Yokohama, JAPAN

Shingo Kato, Microbial ecology of hydrothermally-inactive sulfide deposits in deep-sea hydrothermal fields, 4th InterRidge Theoretical Institute, 20191120, Banyuls-sur-Mer, FRANCE

Moriya Ohkuma, Recent Activities of RIKEN BRC-JCM, Asian Network of Research Resource Centers, the 11th International Meeting, 20191017, Laguna, PHILIPPINS

Shingo Kato, Takashi Itoh, Masahiro Yuki, Masafumi Ohnishi, Nagamori Mai, Tomonori Takashina, Moriya Ohkuma, Isolation of a Sulfur- and Iron-reducing Thermoacidophilic Thaumarchaeote, 15th International Congress on Thermophiles, 20190905, Fukuoka, JAPAN

Hiroyuki D. Sakai, Naswandi Nur, Antonius Suwanto, Takashi Itoh, Moriya Ohkuma, Norio Kurosawa, Experimental Evidence of Symbiotic Lifestyle of a Thermophilic ARMAN Related Archaeon (‘Candidatus Micrarchaeota’) on Various Sulfolobales species, 15th International Congress on Thermophiles, 20190905, Fukuoka, JAPAN

Takashi Itoh, Shigo Kato, Moriya Ohkuma, Japan Collection of Microorganisms Is Homes to a Diverse Groups of Thermophilic Archaea and Bacteria, 15th International Congress on Thermophiles, 20190905, Fukuoka, JAPAN

Awards

A01班

Shun Kobayashi, Daisuke Hira, Keitaro Yoshida, Masanori Toyofuku, Yosuke Shida, Wataru Ogasawara, Takashi Yamaguchi, Nobuo Araki, Mamoru Oshiki, Nitric Oxide Production from Nitrite Reduction and Hydroxylamine Oxidation by Copper-containing Dissimilatory Nitrite Reductase (NirK) from the Aerobic Ammonia-oxidizing Archaeon, Nitrososphaera viennensis,2018年度 M&E論文賞,2019年09月,日本微生物生態学会,日本

山本達也、野村暢彦豊福雅典,細菌が放出するベシクルの新奇形成機構の発見,第18回オレオサイエンス賞,2019年09月,日本油化学会,日本

玉木秀幸, 未知の微生物を”培養”して新たな生物機能を探る, 第3回バイオインダストリー奨励賞, 2019年10月, 一般財団法人バイオインダストリー協会, 日本

手塚武揚, 胞子嚢を形成する希少放線菌の形態分化に関する分子遺伝学的研究, 浜田賞(研究奨励賞), 2019年09月, 日本放線菌学会, 日本

A02班

中村泰輔、河野響、兼崎友、川崎信治、水口千穂、岡田憲典、野尻秀昭,H-NSファミリータンパク質のレギュロンはプラスミド保持に伴い劇的に変化する,優秀発表賞,2020年03月,日本農芸化学会,日本

河野 響、水口 千穂、岡田 憲典、野尻 秀昭,細菌にプラスミドへの非感受性を与える転写制御ネットワークの解明優秀発表賞,2020年03月,日本農芸化学会,日本

德田真穂、千葉怜碧、井上謙吾、雪真弘大熊盛也水口千穂野尻秀昭、金原和秀、新谷政己,同一不和合性群に属するプラスミドであってもその宿主域は異なる,優秀発表賞,2020年03月,日本農芸化学会,日本

河野 響、水口 千穂、岡田 憲典、野尻 秀昭,細菌にプラスミドへの非感受性を与える転写制御ネットワークの解明,トピックス賞,2020年03月,日本農芸化学会,日本

宮崎つぐみ、高谷直樹,フミン酸添加培養モデルが解明する土壌中での糸状菌の代謝制御,ピックス賞,2020年03月,日本農芸化学会,日本

加藤真悟,極限環境下の「鉄」にまつわる微生物生態学,研究奨励賞,2019年11月,極限環境生物学会,日本

Books

山本達也、野村暢彦、豊福雅典「第18 回日本油化学会オレオサイエンス賞受賞に寄せて」オレオサイエンス 19 (8) 339,共著,日本語

Toyofuku, M.”Bacterial communication through membrane vesicles” Biosci Biotechnol Biochem 83(9):1599-1606,単著,英語

Nagakubo, T.,  Nomura, N., Toyofuku, M. “Cracking Open Bacterial Membrane Vesicles” Frontiers in Microbiology 10:3026,共著,英語

Morinaga, K, Yoshida, K, Takahashi, K, Nomura, N, Toyofuku, M. “Peculiarities of biofilm formation by Paracoccus denitrificans and associated factors” Applied Microbiology and Biotechnology, 104(6):2427-2433,共著,英語

Abe, K, Nomura, N, Suzuki, S. “Biofilms: Hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanism” FEMS Microbiology Ecology  doi: 10.1093/femsec/fiaa031,共著,英語

Toyofuku, M, Tashiro, Y, Nomura, N, Eberl, L. “Function of MVs in inter-bacterial communication” In: Kaparakis-Liaskos M., Kufer T. (eds) Bacterial Membrane Vesicles. Springer, Cham,共著,英語

田伏義彦、尾花望、野村暢彦「クオラムセンシングによるバイオフィルムの不均一性と形態制御」BACTERIAL ADHERENCE & BIOFILM,単著,日本語

Patents

野村暢彦、ウタダ アンドリュー シンイチ、ダウイン バク ヴ ヤン「洗浄および防汚組成物並びにバイオフィルムの除去および形成抑制用組成物」出願番号:2019-184173 (2019/10/04出願) 出願人:国立大学法人筑波大学

Outreach activities

A01班

重藤真介,ポストコッホ微生物学のすすめ,2019年10月24日,日本語,関西学院高等部 主催,西宮

重藤真介,ポストコッホ時代の微生物を観る、採る,新学術領域「ポストコッホ生態」キックオフシンポジウム,2019年09月26日,つくば

野村暢彦,集団微生物学と革新的微生物制御-サイエンスとテクノロジーの双輪-,シンポジウム「微生物の個・集団・共生が支える持続可能な社会」,2020年02月10日,つくば

野村暢彦,微生物の個・集団・共生が支える持続可能な社会,TSB-JST Nomura ERATO-SBJ  joint  session,2019年11月11-12日,英語,TSB, JST Nomura ERATO, SBJ  共催,Phuket, Thailand

野村暢彦,集団微生物制御への展開そしてポストERATOを見据えて, JST ERATO深津共生進化機構プロジェクト キックオフシンポジウム ,2019年10月30日,日本語,JST-ERATO 主催,産総研つくば

跡見晴幸,極限環境下の生命:微生物とその多様性,The Extremes of Life: Microbes and Their Diversity,20191001開講-20200805終了,英語,edX 主催,ネット配信

跡見晴幸,新学術領域「超地球生命体を解き明かすポストコッホ機能生態学」ポスター展示,第14回日本ゲノム微生物学会年会,2020年3月06-07日,日本語, 日本ゲノム微生物学会年会 主催,名古屋

跡見晴幸,新学術領域「超地球生命体を解き明かすポストコッホ機能生態学」ポスター展示,第20回極限環境生物学会年会,2019年11月16-17日, 日本語,極限環境生物学会 主催,京都大学桂キャンパス

大西康夫,醗酵学研究室 研究紹介醗酵学研究室 研究室見学及び模擬授業(大阪府立天王寺高校)2019年08月03日日本語東京

大西康夫醗酵学研究室 研究紹介醗酵学研究室 研究室見学及び模擬授業(静岡県立藤枝東高校),2019年08月03日日本語東京

大西康夫,醗酵学研究室 研究紹介,醗酵学研究室 研究室見学及び研究解説(神奈川県立湘南高校), 2019年08月09日,日本語東京

大西康夫,醗酵学研究室 研究紹介,醗酵学研究室 研究室見学及び研究解説(私立フェリス女学院高校), 2019年08月09日日本語東京

A02班

新谷政己,環境は持続可能か? ~微生物による環境浄化の開発~ ,,創立70周年記念 静岡大学・読売新聞連続市民講座 2019 令和を生きる~新時代への展望~ ,2019年09月07日,日本語,静岡大学・読売新聞連続市民講座, 静岡 あざれあ大ホール,市民講座

野尻秀昭,環境の微生物研究への招待,2019年08月06日,日本語,東京大学生物生産工学研究センター,東京,高校生向けの模擬講義

野尻秀昭,環境の微生物科学への誘い,2019年07月10日, 日本語,東京大学生物生産工学研究センター,東京, 高校生向けの模擬講義

野尻秀昭,大学の教員は何をする職業なのか?,富山県立富山高等学校第1学年進路講演会,2019年07月04日,日本語,富山県立富山高等学校,富山,高校生向けの模擬講義進路講演会で研究を紹介

高谷直樹,ポストコッホ微生物~この微生物の可能性,シンポジウム「微生物の個・集団・共生が支える持続可能な社会」,2020年02月10日,つくば

高谷直樹,研究室訪問,2020年02月06日,筑波大学,つくば

森ヶ崎進,新学術領域「ポストコッホ生態」の紹介,令和元年度(2019年度)遺伝研研究会「微生物における大規模ゲノム・代謝改変技術とその利用」,2019年11月22日,日本語,国立遺伝学研究所,静岡,ライトニングトークで領域研究を紹介

高谷直樹,ポストコッホ生態が目指すところ,新学術領域「ポストコッホ生態」キックオフシンポジウム,2019年09月26日,つくば