A０１班

Chen, L., Guo, H., Wang, C., Chen, B., Sassa, F., Hayashi, K. “Two-dimensional SERS sensor array for identifying and visualizing the gas spatial distributions of two distinct odor sources” MDPI Sensors 24, 790, 2024, doi: 3390/s24030790

Matsuoka, M., Lingpu, G., Sassa, F., Hayashi, K. “Spatiotemporal visualization of gases using 2D LSPR gas sensor” IEEE Sensors Letters 7, 5000704, 2023, doi: 1109/LSENS.2023.3301847

Otsuka, R., Zhang, S., Hayashi, K., Sassa, F. “Active optical sensor micro-robot equipped with multi-DoF gripper arm based on kinetic electronics” IEEE Sensors Letters 7, 5000604, 2023, doi: 1109/LSENS.2023.3303076

Jiang, T., Ye, X., Ge, L., Guo, H., Sassa, F., Hayashi, K. “Subpixel patterned LSPR gas sensor array with using inkjet printing Au/Ag nanoparticle to enhance the selectivity” IEEE Sensors Letters 7, 4502304, 2023, doi: 1109/LSENS.2023.3300820

Yang, Z., Sassa, F., Hayashi, K. “An odor trace visualization system using a two-dimensional backside scattering localized surface plasmon resonance gas sensor” MDPI Sensors 23, 9525, 2023, doi: 3390/s23239525

Chen, L., Guo, H., Matsuo, T., Sassa, F., Hayashi, K. “Visualization of the Gas Spatial Distribution of the Odor Source by SERS Gas Sensor” IEEJ Transactions on Electrical and Electronic Engineering 19, 876-881, 2024, doi: 1002/tee.23988

Yusuke Tahara, Fumihiro Sassa, Ryo Takigawa, Yuma Kurihara “Development of a microfluidic-based taste sensor using lipid polymer membrane” Japanese Journal of Applied Physics 62, SG1014, 2023, doi: 35848/1347-4065/acb4fa

Chiho Suzuki-Minakuchi, Natsumi Yamamoto, Saki Takahira, Masataka Yamaguchi, Yutaro Takeda, Kazunori Okada, Shinsuke Shigeto, Hideaki Nojiri “Transcriptional heterogeneity of catabolic genes on the plasmid pCAR1 causes host-specific carbazole degradation” Applied and Environmental Microbiology 90, e0124723, 2024, doi: 1128/aem.01247-23

Risa Sasaki, Shogo Toda, Takaiku Sakamoto, Eiji Sakuradani, Shinsuke Shigeto “Simultaneous imaging and characterization of polyunsaturated fatty acids, carotenoids, and microcrystalline guanine in single Aurantiochytrium limacinum cells with linear and nonlinear Raman microspectroscopy” The Journal of Physical Chemistry B 127, 2708-2718, 2023, doi: 1021/acs.jpcb.3c00302

Takahashi, K., Oshiki, M., Ruan, C., Morinaga, K., Toyofuku, M., Nomura, N., Johnson, D.R. “Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations” Environmental Microbiology Reports 16, e13221, 2024, doi: 1111/1758-2229.13221

Tokunou, Y., Tongu, H., Kogure, Y., Okamoto, A., Toyofuku, M., Nomura, N. “Colony-based electrochemistry reveals electron conduction mechanisms mediated by cytochromes and flavins in Shewanella oneidensis” Environmental Science & Technology 58, 4670-4679, 2024, doi: 1021/acs.est.4c00007

Kawashima, K., Nagakubo, T., Nomura, N., Toyofuku, M. “Iron delivery through membrane vesicles in Corynebacterium glutamicum” Microbiology Spectrum 11, e0122223, 2023, doi: 1128/spectrum.01222-23

Nagakubo, T., Asamizu, S., Yamamoto, T., Kato, M., Nishiyama, T., Toyofuku, M., Nomura, N., Onaka, H. “Intracellular phage tail-like nanostructures affect susceptibility of Streptomyces lividans to osmotic stress” mSphere 8, e0011423, 2023, doi: 1128/msphere.00114-23

Toyofuku, M., Schild, S., Kaparakis-Liaskos, M., Eberl, L. “Composition and functions of bacterial membrane vesicles” Nature Reviews Microbiology 21, 415-430, 2023, doi: 1038/s41579-023-00875-5

Prasad, M., Obana, N., Lin, S.Z., Zhao, S., Sakai, K., Blanch-Mercader, C., Prost, J., Nomura, N., Rupprecht, J.F., Fattaccioli, J., Utada, A.S. “Alcanivorax borkumensis biofilms enhance oil degradation by interfacial tubulation” Science 381, 748-753, 2023, doi: 1126/science.adf3345

Heredia-Ponce, Z., Secchi, E., Toyofuku, M., Marinova, G., Savorana, G., Eberl, L. “Genotoxic stress stimulates eDNA release via explosive cell lysis and thereby promotes streamer formation of Burkholderia cenocepacia H111 cultured in a microfluidic device” npj Biofilms and Microbiomes 9, 96, 2023, doi: 1038/s41522-023-00464-7

Shigeru Azuma, Hitoshi Kawasuji, Ryosuke Nakai (co-first), Hiroshi Yamada, Yoshihiro Yoshida, Hiroyuki Kawahara, Mai Suzuki, Shunsuke Mori, Masayoshi Hirata, Kazushige Sugie, Hideki Niimi, Yoshitomo Morinaga, Yoshihiro Yamamoto “The fatal case of “Pigmentibacter” bacteremia following aspiration pneumonia in elderly patient“ Journal of Infection and Chemotherapy 30, 806-811, 2024, doi: 1016/j.jiac.2024.01.019

Nakai, R., Kusada, H., Sassa, F., Makino, A., Morigasaki, S., Hayashi, H., Takaya, N., Tamaki, H. “Roseiterribacter gracilis nov., sp. nov., a novel filterable alphaproteobacterium isolated from soil using a gel-filled microwell array device” PLoS One 19, e0304366, 2024, doi: 10.1371/journal.pone.0304366

Ryosuke Nakai, Shouno Munekawa, Yoshinori Murai, Yoshihito Ohmura, Kenichiro Tani “Diversity profiling of microbiomes associated with selected alpine plants and lichens from Mt. Suisho, Japan“ Microbiology Resource Announcements 13, e01270-23, 2024, doi: 1128/mra.01270-23

Samiul Islam, Kyosuke Yamamoto, Naoki Morita, Isao Yumoto, Souichiro Kato, Ryosuke Nakai, Kensuke Igarashi “Complete genome sequence of Opitutales bacterium strain ASA1, isolated from soil“ Microbiology Resource Announcements 13, e01032-23, 2024, doi: 10.1128/mra.01032-23

Tomoki Nishioka, Kana Morinaga, Hideyuki Tamaki “Complete genome sequence of Dyella strain GSA-30, a predominant endophytic bacterium of Dendrobium plants” Microbiology Resource Announcements 12, e01338-22, 2023, doi: 10.1128/mra.01338-22

Atsushi C. Suzuki, Kenta Sugiura, Megumu Tsujimoto, Ryosuke Nakai, Sandra J. McInnes, Hiroshi Kagoshima, Satoshi Imura “A new species of bisexual Milnesium (Eutardigrada: Apochela) having aberrant claws from innhovde, Dronning Maud Land, East Antarctica” Zoological Science 40, 246-261, 2023, doi: 2108/zs220085

Sho Shimada, Kotaro Aoki, Ryosuke Nakai, Shota Miura, Kohji Komori, Sakae Kudoh, Satoshi Imura, Yoshikazu Ishii, Kazuhiro Tateda “Whole-genome sequences of three psychrotolerant Mycolicibacterium strains isolated from Antarctic soil“ Microbiology Resource Announcements 12, e00123-23, 2023, doi: 10.1128/mra.00123-23

Sho Shimada, Ryosuke Nakai (co-first), Kotaro Aoki, Shota Miura, Kohji Komori, Sakae Kudoh, Satoshi Imura, Yoshikazu Ishii, Kazuhiro Tateda “Complete genome sequence of Polynucleobacter strain TUM22923, isolated from Antarctic lake sediment“ Microbiology Resource Announcements 12, e00146-23, 2023, doi: 10.1128/mra.00146-23

Yuta Michimori, Rikihisa Izaki, Yu Su, Yuto Fukuyama, Shigeru Shimamura, Karin Nishimura, Yuya Miwa, Sotaro Hamakita, Takahiro Shimosaka, Yuki Makino, Ryo Takeno, Takaaki Sato, Haruki Beppu, Isaac Cann, Tamotsu Kanai, Takuro Nunoura, Haruyuki Atomi “Removal of phosphoglycolate in hyperthermophilic archaea” Proceedings of the National Academy of Sciences USA 121, e2311390121, 2024, doi: 1073/pnas.2311390121

Yuta Michimori, Yuusuke Yokooji, Haruyuki Atomi “A energy-conserving reaction in amino acid metabolism catalyzed by arginine synthetase” Proceedings of the National Academy of Sciences USA 121, e2401313121, 2024, doi: 1073/pnas.2401313121

Yuto Fukuyama, Shigeru Shimamura, Sanae Sakai, Yuta Michimori, Tomomi Sumida, Yoshito Chikaraishi, Haruyuki Atomi, Takuro Nunoura “Development of a rapid and highly accurate method for ¹³C tracer-based metabolomics and its application on a hydrogenotrophic methanogen” ISME Communications 4, ycad006, 2024, doi: 1093/ismeco/ycad006

Akiko Kita, Yuna Ishida, Takahiro Shimosaka, Yuta Michimori, Kira Makarova, Eugene Koonin, Haruyuki Atomi, Kunio Miki “Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis” Proteins 92, 768-775, 2024, doi: 1002/prot.26666

Laura Eme, Daniel Tamarit, Eva F Caceres, Courtney W Stairs, Valerie De Anda, Max E Sch”n, Kiley W Seitz, Nina Dombrowski, William H Lewis, Felix Homa, Jimmy H Saw, Jonathan Lombard, Takuro Nunoura, Wen-Jun Li, Zheng-Shuang Hua, Lin-Xing Chen, Jillian F Banfield, Emily St John, Anna-Louise Reysenbach, Matthew B Stott, Andreas Schramm, Kasper U Kjeldsen, Andreas P Teske, Brett J Baker, Thijs J G Ettema “Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes“ Nature 618, 992-999, 2023, doi: 1038/s41586-023-06186-2

Yu Su, Yuta Michimori, Haruyuki Atomi “Biochemical and genetic examination of two aminotransferases from the hyperthermophilic archaeon Thermococcus kodakarensis” Frontiers in Microbiology 14, 1126218, 2023, doi: 3389/fmicb.2023.1126218

Yuto Chiba, Akinori Yabuki, Yoshihiro Takaki, Takuro Nunoura, Syun-ichi Urayama, Daisuke Hagiwara “The first identification of a Narnavirus in Bigyra, a marine protist” Microbes and Environments 38, ME22077, 2023, doi: 1264/jsme2.ME22077

Kohtaro Hirao, Immacolata Speciale, Anna Notaro, Yoshiyuki Manabe, Yoshiaki Teramoto, Takaaki Sato, Haruyuki Atomi, Antonio Molinaro, Yoshihiro Ueda, Cristina De Castro, Koichi Fukase “Structural determination and chemical synthesis of the N-glycan from the hyperthermophilic archaeon Thermococcus kodakarensis” Angewandte Chemie International Edition 62, e202218655, 2023, doi: 1002/anie.202218655

Seiji Kawai, Akito Yamada, Yohei Katsuyama, Yasuo Ohnishi “Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway” Beilstein Journal of Organic Chemistry 20, 1-11, 2024, doi: 3762/bjoc.20.1

Rattiya Janthanom, Yuta Kikuchi, Hiroki Kanto, Tomoyasu Hirose, Arisu Tahara, Takahiro Ishii, Arinthip Thamchaipenet, Yuki Inahashi “A new analog of dihydroxybenzoic acid from Saccharopolyspora KR21-0001“ Beilstein Journal of Organic Chemistry 20, 497-503, 2024, doi: 10.3762/bjoc.20.44

Takuya Akutsu, Takeaki Tezuka, Manato Maruko, Aiko Hirata, Yasuo Ohnishi “The ssgB gene is required for the early stages of sporangium formation in Actinoplanes missouriensis” Journal of Bacteriology 206, e0042823, 2024, doi: 1128/jb.00428-23

Zhusen Tan, Takeaki Tezuka, Yasuo Ohnishi “Identification of a putative cell wall-hydrolyzing amidase involved in sporangiospore maturation in Actinoplanes missouriensis” Journal of Bacteriology 206, e0045623, 2024, doi: 1128/jb.00456-23

Seiji Kawai, Akito Yamada, Danyao Du, Yoshinori Sugai, Yohei Katsuyama, Yasuo Ohnishi “Identification and analysis of the biosynthetic gene cluster for the hydrazide-containing aryl polyene spinamycin” ACS Chemical Biology 18, 1821-1828, 2023, doi: 1021/acschembio.3c00248

Yusuke Shikai, Seiji Kawai, Yohei Katsuyama, Yasuo Ohnishi “In vitro characterization of nonribosomal peptide synthetase-dependent O-(2-hydrazineylideneacetyl)serine synthesis indicates a stepwise oxidation strategy to generate the α-diazo ester moiety of azaserine” Chemical Science 14, 8766-8776, 2023, doi: 1039/d3sc01906c

Yuta Awano, Hayama Tsutsumi, Yuta Kikuchi, Aoi Kimishima, Masato Iwatsuki, Yukihiro Asami, Yuki Inahashi “Emblestatin: a new peptide antibiotic from Embleya scabrispora K20-0267” Journal of Antibiotics 76, 592-597, 2023, doi: 1038/s41429-023-00645-8

Shixuan Hu, Yuhei O Tahara, Takeaki Tezuka, Makoto Miyata, Yasuo Ohnishi “Architecture of Actinoplanes missouriensis sporangia and zoospores visualized using quick-freeze deep-etch electron microscopy” Bioscience, Biotechnology and Biochemistry 88, 225-229, 2023, doi: 1093/bbb/zbad159

Takeaki Tezuka, Kyota Mitsuyama, Risa Date, Yasuo Ohnishi “A unique sigma/anti-sigma system in the actinomycete Actinoplanes missouriensis” Nature Communications 14, 8483, 2023, doi: 10.1038/s41467-023-44291-y

A02班

Maho Tokuda, Masaki Shintani “Microbial evolution through horizontal gene transfer by mobile genetic elements“ Microbial Biotechnology 17, e14408, 2024, doi: 1111/1751-7915.14408

Yoshiaki Maeda, Toshiki Hirakawa, Shigekatsu Suzuki, Noraiza Suhaimi, Nurul Syahirah Shamsol Anuar, Kohei Yoneda, Masaki Shintani, Kenshi Suzuki, Naoki Sunagawa, Masanobu Kawachi, Iwane Suzuki, Hirofumi Hara “Chromosome-scale genome assembly of an acidophilic microalga Tetratostichococcus P1 isolated from a tropical peatland in Malaysia“ Microbiology Resource Announcements 13, e0081623, 2024, doi: 10.1128/MRA.00816-23

Masahiro Honjo, Kenshi Suzuki, Junya Katai, Yosuke Tashiro, Tomo Aoyagi, Tomoyuki Hori, Takashi Okada, Yasuhisa Saito, Hiroyuki Futamata “Stable states of microbial community are formed by dynamic metabolic networks with members functioning as both robustness and plasticity” Microbes and Environments 39, ME23091, 2024, doi: 1264/jsme2.ME23091

Chiho Suzuki-Minakuchi, Natsumi Yamamoto, Saki Takahira, Masataka Yamaguchi, Yutaro Takeda, Kazunori Okada, Shinsuke Shigeto, Hideaki Nojiri “Transcriptional heterogeneity of catabolic genes on the plasmid pCAR1 causes host-specific carbazole degradation” Applied and Environmental Microbiology 90, e0124723, 2024, doi: 1128/aem.01247-23

Shintani M, Suzuki H, Nojiri H, Suzuki M “Reconsideration of the previously classified incompatibility groups of plasmids, IncP-1 and IncP-11” Environmental Microbiology 25, 1071-1076, 2023, doi: 1111/1462-2920.16345

Maho Tokuda, Masahiro Yuki, Moriya Ohkuma, Kazuhide Kimbara, Haruo Suzuki, Masaki Shintani “Transconjugant range of PromA plasmids in microbial communities is predicted by sequence similarity with the bacterial host chromosome” Microbial Genomics 9, mgen001043, 2023, doi: 1099/mgen.0.001043

Ifat Ara, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Naoto Ogawa, Masaki Shintani “Isolation and genomic analysis of 3-chlorobenzoate-degrading bacteria from soil” Microorganisms 11, 1684, 2023, doi: 3390/microorganisms11071684

Jaka Widada, Ema Damayanti, Camelia Herdini, Nastiti Wijayanti, Akira Hosoyama, Atsushi Yamazoe, Chiho Suzuki-Minakuchi, Bambang Hariwiyanto, Sofia Mubarika, Achmad Dinoto, Mustofa, Hideaki Nojiri “Draft genome sequence of the marine-derived, anticancer compound-producing bacterium Streptomyces strain GMY01” Microbiology Resource Announcements 12, e0136620, 2023, doi: 10.1128/mra.01366-20

Masaki Shintani, Gisle Vestergaard, Milena Milaković, Susanne Kublik, Kornelia Smalla, Michael Schloter, Nikolina Udiković-Kolić “Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies” Environmental Microbiology 25, 3035-3051, 2023, doi: 1111/1462-2920.16481

Shintani M, Suzuki H, Nojiri H, Suzuki M “Reconsideration of the previously classified incompatibility groups of plasmids, IncP-1 and IncP-11” Environmental Microbiology25, 1071-1076, 2023, doi: 1111/1462-2920.16345

Amahisa, M., Tsukagoshi, M., Kadooka, C., Masuo, S., Takeshita, N., Doi, Y., Takagi, H., Takaya, N. “The metabolic regulation of amino acid synthesis counteracts reactive nitrogen stress via Aspergillus nidulans cross-pathway control” Journal of Fungi 10, 58, 2024, doi: 3390/jof10010058

Katsuki, N., Fukushima, R., Doi, Y., Masuo, S., Arakawa, T., Yamada, C., Fushinobu, S., Takaya, N. “Protocatechuate hydroxylase is a novel group A flavoprotein monooxygenase with a unique substrate recognition mechanism” Journal of Biological Chemistry 300, 105508, 2024, doi: 1016/j.jbc.2023.105508

Susumu Morigasaki, Motomu Matsui, Iwao Ohtsu, Yuki Doi, Yusuke Kawano, Ryosuke Nakai, Wataru Iwasaki, Hisayoshi Hayashi, Naoki Takaya “Temporal and fertilizer-dependent dynamics of soil bacterial communities in buckwheat fields under long-term management” Scientific Reports 14, 9896, 2024, doi: 1038/s41598-024-60655-w

Pu Jian, Takuto Kumano, Mio Kimura, Makoto Kurisaki, Yoshiteru Hashimoto, Michihiko Kobayashi “Biodegradation of the methylenedioxyphenyl group in piperine and its derivatives: discovery of a novel methylenetransferase in an actinomycete” Applied and Environmental Microbiology 89, e0114523, 2023, doi: 1128/aem.01145-23

Itani A, Masuo S, Yamamoto R, Serizawa T, Fukasawa Y, Takaya N, Toyota M, Betsuyaku S, Takeshita N. “Local calcium signal transmission in mycelial network exhibits decentralized stress responses” PNAS nexus 2, 1-10, 2023, doi: 1093/pnasnexus/pgad012

Matsumoto, H., Matsui, M. “NeTaGFT: A similarity network-based method for trait analysis” Methods in Ecology and Evolution 15, 153-163, 2024, doi: 1111/2041-210X.14251

Tam, C., Iwasaki, W. “AlphaCutter: Efficient removal of non-globular regions from predicted protein structures” Proteomics 23, e2300176, 2023, doi: 1002/pmic.202300176

Hiruma, K., Aoki, S., Takino, J., Higa, T., Utami, Y.D., Shiina, A., Okamoto, M., Nakamura, M., Kawamura, N., Ohmori, Y. and Sugita, R., Tanoi, K., Sato, T., Oikawa, H., Minami, A., Iwasaki, W., Saijo, Y. “A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae” Nature Communications 14, 5288, 2023, doi: 1038/s41467-023-40867-w

Anda, M., Yamanouchi, S., Cosentino, S., Sakamoto, M., Ohkuma, M., Takashima, M., Toyoda, A., Iwasaki, W. “Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years” Nature Communications 14, 7232, 2023, doi: 1038/s41467-023-42681-w

Miyata, K., Iwasaki, W. “Seq2Phase: language model-based accurate prediction of client proteins in liquid-liquid phase separation” Bioinformatics Advances 4, vbad189, 2023, doi: 1093/bioadv/vbad189

Itoh, T., Miyata, M., Ohkuma, M. “Cell surface architecture of the cultivated DPANN archaeon Nanobdella aerobiophila” Journal of Bacteriology 206, e0035123, 2024, doi: 10.1128/jb.00351-23

Tazawa, J., Kobayashi, H., Tanizawa, Y., Uchino, A., Tanaka, F., Urashima, Y., Miura, S., Sakamoto, M., Ohkuma, M.,, Tohno, M. “Clostridium folliculivorans nov., isolated from soil samples of an organic paddy in Japan” International Journal of Systematic and Evolutionary Microbiology 73, 5876, 2023, doi: 10.1099/ijsem.0.005876

Hisatomi, A., Ohkuma, M., Sakamoto, M. “Sellimonas catena nov., isolated from human faeces” International Journal of Systematic and Evolutionary Microbiology 73, 5853, 2023, doi: 10.1099/ijsem.0.005853

Noda, S., Kitade, O., Jasso-Selles, D. E., Taerum, S. J., Takayanagi, M., Radek, R., Lo, N., Ohkuma, M., Gile, G.H. “Molecular phylogeny of Spirotrichonymphea (Parabasalia) with emphasis on Spironympha, Spirotrichonympha, and three new genera Pseudospironympha, Nanospironympha, and Brugerollina” Journal of Eukaryotic Microbiology 70, e12967, 2023, doi: 1111/jeu.12967

Mori, H., Kato, T., Ozawa, H., Sakamoto, M., Murakami, T., Taylor, T. D., Toyoda, A., Ohkuma, M., Kurokawa, K., Ohno, H. “Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community” DNA Research 30, dsad010, 2023, doi: 1093/dnares/dsad010

Aoki, K., Yamamoto, K., Ohkuma, M., Sugita, T., Tanaka, N., Takashima, M. “Hyphal growth in Trichosporon asahii is accelerated by the addition of magnesium” Microbiology Spectrum 11, e0424222, 2023, doi: 1128/spectrum.04242-22

Kawasaki, S., Ozawa, K., Mori, T., Yamamoto, A., Ito, M., Ohkuma, M., Sakamoto, M., Matsutani, M. “Symbiosis of carpenter bees with uncharacterized lactic acid bacteria showing NAD auxotrophy“ Microbiology Spectrum 22, 00782-23, 2023, doi: 1128/spectrum.00782-23

Sakamoto, M., Sakurai, N., Tanno, H., Iino, T., Ohkuma, M., Endo, A. “Faecalibacterium hominis Liu et al. 2023 is a later heterotypic synonym of Faecalibacterium duncaniae Sakamoto et al. 2022” International Journal of Systematic and Evolutionary Microbiology 73, 5995, 2023, doi: 1099/ijsem.0.005995

Klykleung, N., Matsuo, H., Iwatsuki, M., Takahashi, Y., Ōmura, S., Yuki, M., Kudo, T., Ohkuma, M., Luechapudiporn, R., Tanasupawat, S., Nakashima, T. “Genomic analysis and physicochemical screening of ikarugamycin, fumaquinone, and a new compound, pudicin from Streptomyces 3MP-14” ScienceAsia 49, 661-669, 2023, doi: 10.2306/scienceasia1513-1874.2023.067

Hisatomi, A., Kastawa, N. W. E. P. G., Song, I., Ohkuma, M., Fukiya, S., Sakamoto, M. “Claveliimonas bilis gen. nov., sp. nov., deoxycholic acid-producing bacteria isolated from human faeces, and reclassification of Sellimonas monacensis Zenner et al. 2021 as Claveliimonas monacensis nov.” International Journal of Systematic and Evolutionary Microbiology 73, 6030, 2023, doi: 10.1099/ijsem.0.006030

Iino, T., Oshima, K., Hattori, M., Ohkuma, M., Amachi, S. “Iron corrosion concomitant with nitrate reduction by Iodidimonas nitroreducens nov. isolated from iodide-rich brine associated with natural gas” Frontiers in Microbiology 14, 1232866, 2023, doi: 10.3389/fmicb.2023.1232866

Hisatomi, A., Tourlousse, D. M., Hamajima, M., Ohkuma, M., Sekiguchi, Y., Sakamoto, M. “Complete genome sequences of Ruminococcus torques strains JCM 36208 and JCM 36209, isolated from the feces of a healthy Japanese male” Microbiology Resource Announcements 12, e0063223, 2023, doi: 1128/MRA.00632-23

Hashimoto, A., Shibata, S., Ohkuma, M. “Phylogenetic and morphological re‑evaluation of Antherospora on Barnardia japonica collected in Japan” Mycological Progress 22, 87, 2023, doi: 1007/s11557-023-01935-z

公募班

Eun-Young Seo, Dawoon Jung, Slava S. Epstein, Weiyan Zhang, Jeffrey S. Owen, Hiroaki Baba, Akina Yamamoto, Mifuyu Harada, Yutaka Nakashimada, Setsu Kato, Yoshiteru Aoi, Shan He “A targeted liquid cultivation method for previously uncultured non-colony forming microbes“ Frontiers in Microbiology 14, 1194466, 2023, doi: 10.3389/fmicb.2023.1194466

Rino Isshiki, Hirotsugu Fujitani, Satoshi Tsuneda “Variation in growth rates between cultures hinders the cultivation of ammonia-oxidizing bacteria” FEMS Microbiology Letters 371, fnae013, 2024, doi: 10.1093/femsle/fnae013

Ochiai, K.K., Hanawa, D., Ogawa, H.A., Tanaka, H., Uesaka, K., Edzuka, T., Shirae‐Kurabayashi, M., Toyoda, A., Itoh, T., Goshima, G. “Genome sequence and cell biological toolbox of the highly regenerative, coenocytic green feather alga Bryopsis” Plant Journal, tpj.16764, 2024, doi: 10.1111/tpj.16764

Goda, M., Shribak, M., Ikeda, Z., Okada, N., Tani, T., Goshima, G., Oldenbourg, R., Kimura, A. “Live-cell imaging under centrifugation characterized the cellular force for nuclear centration in the Caenorhabditis elegans embryo” bioRxiv , , 24, doi: 10.1101/2024.01.03.574024

Kurita, G., Goshima, G., Uesaka, K. “Draft genome sequences of two dothideomycetes strains, NU30 and NU200, derived from the marine environment around Sugashima, Japan” Microbiology Resource Announcements 12, e0121722, 2023, doi: 10.1128/mra.01217-22

Yoshida, M.W., Hakozaki, M., Goshima, G. “Armadillo repeat-containing kinesin represents the versatile plus-end-directed transporter in Physcomitrella” Nature Plants 9, 733-748, 2023, doi: 10.1038/s41477-023-01397-x

Yoshida, M.W., Oguri, N., Goshima, G. “Physcomitrium patens SUN2 mediates MTOC association to the nuclear envelope and facilitates chromosome alignment during spindle assembly” Plant and Cell Physiology 64, 1106-1117, 2023, doi: 10.1093/pcp/pcad074

Ta, K.N., Yoshida, M.W., Tezuka, T., Shimizu-Sato, S., Nosaka-Takahashi, M., Toyoda, A., Suzuki, T., Goshima, G., Sato, Y., “Control of plant cell growth and proliferation by MO25A, a conserved major component of the Mammalian Sterile20-like kinase pathway” Plant and Cell Physiology 64, 336-351, 2023, doi: 10.1093/pcp/pcad005

Tatsuki Kunoh, Tatsuya Yamamoto, Erika Ono, Shinya Sugimoto, Minoru Takeda, Nobuhiko Nomura “Identification of lthB, a gene encoding a putative glycosyltransferase family 8 protein required for Leptothrix sheath formation” Applied and Environmental Microbiology 89, e0191922, 2023, doi: 10.1128/aem.01919-22

Kakizaki, T., Abe, H., Kotouge, Y., Matsubuchi, M., Sugou, M., Honma, C., Tsukuta, K., Satoh, S., Shioya, T., Nakamura, H., Cannon, K.S, Woods, B.L., Gladfelter, A., Takeshita, N, Muraguchi, H. “Live-cell imaging of septins and cell polarity proteins in the growing dikaryotic vegetative hypha of the model mushroom Coprinopsis cinerea” Scientific Reports 13, 10132, 2023, doi: 10.1038/s41598-023-37115-y

Pruneda, J.N., Nguyen, J.V., Nagai, H., Kubori, T. “Bacterial usurpation of the OTU deubiquitinase fold” FEBS Journal 291, 3303-3316, 2024, doi: 10.1111/febs.16725

Kubori, T., Arasaki, K., Oide, H., Kitao, T., Nagai, H. “Multi-tiered actions of Legionella effectors to modulate host Rab10 dynamics” eLife 12, RP89002, 2024, doi: 10.7554/eLife.89002.3

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