研究成果

研究成果

Researsh Articles/Reviews

(Under Construction)

Nanako Kanno, Shingo Kato, Moriya Ohkuma, Motomu Matsui, Wataru Iwasaki, Shinsuke Shigeto “Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotes” iScience, 24(9) 102975, 2021.09, doi: 10.1016/j.isci.2021.102975

Toyofuku, M, Nomura, N, Eberl, L “Membrane vesicles and quantized bacterial signaling” Physical Biology, xx(-) x-y, 2021.06, doi: TBA

Kunoh, T, Yamamoto, T, Sugimoto, S, Ono, E, Nomura, N, Utada, AS “Leptothrix cholodnii Response to Nutrient Limitation” Frontiers in Microbiology, 12(-) 691563, 2021.07, doi: 10.3389/fmicb.2021.691563

Abe, K, Toyofuku, M, Nomura, N, Obana, N “Autolysis-mediated membrane vesicle formation in Bacillus subtilisEnvironmental Microbiology, 23(5) 2632-2647, 2021.05, doi: 10.1111/1462-2920.15502

Shimada, S*, Nakai, R*, Aoki, K, Kudoh, S, Imura, S, Shimoeda, N, Ohno, G, Watanabe, K, Miyazaki, Y, Ishii, Y, Tateda, K “Characterization of the first cultured psychrotolerant representative of Legionella from Antarctica reveals its unique genome structure” Microbiology Spectrum, xx(-) x-y, 2021.00, doi: TBA (*equal contribution)

Nakai, R*, Kusada, H*, Sassa, F, Morigasaki, S, Hayashi, H, Takaya, N, Tamaki, H “Draft genome sequence of novel filterable Rhodospirillales bacterium strain TMPK1, isolated from soil” Microbiology Resource Announcements10(28) e00393-21, 2021.07, doi: 10.1128/MRA.00393-21 (*equal contribution)

Nakai R, Naganuma T, Tazato N, Kunihiro T, Morohoshi S, Koide T, Kusada H, Tamaki H, Narihiro T “Characterization of Terrihabitans soli gen. nov., sp. nov., a novel 0.2 μm-filterable soil bacterium belonging to a widely distributed lineage of Hyphomicrobiales (Rhizobiales)” Diversity, 13(9) 422, 2021.07, doi: 10.3390/d13090422

中井亮佑(2021) 極地に生きる未知微生物は何者か?、極限環境生物学会誌、19号、p 25-31.(in Japanese with English abstract and figures)

Mori, Y., Kawamura, H., Sato, T., Fujita, T., Nagata, R., Fujihashi, M., Miki, K., Atomi, H. “Identification and enzymatic analysis of an archaeal ATP-dependent serine kinase from the hyperthermophilic archaeon Staphylothermus marinus Journal of Bacteriology, 203(16) e0002521, 2021.07, doi: 10.1128/JB.00025-21 

Melina Kerou, Rafael I Ponce-Toledo, Rui Zhao, Sophie S Abby, Miho Hirai, Hidetaka Nomaki, Yoshihiro Takaki, Takuro Nunoura, Steffen L Jørgensen, Christa Schleper “Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages” ISME Journal, 15(-) 2792-2808, 2021.04, doi: 10.1038/s41396-021-00962-6

跡見晴幸「超好熱菌の高温適応戦略」熱測定, 48(2) 78, 2021.04, abstract

Seiji Kawai, Yuko Sugaya, Ryota Hagihara, Hiroya Tomita, Yohei Katsuyama, and Yasuo Ohnishi “Complete biosynthetic pathway of alazopeptin, a tripeptide consisting of two molecules of 6-diazo-5-oxo-L-norleucine and one molecule of alanine” Angewandte Chemie-International Edition, 60(18) 10319-10325, 2021.04, doi: 10.1002/anie.202100462

Chakraborty J, Suzuki-Minakuchi C, Tomita T, Okada K, Nojiri H “A novel gene cluster is involved in the degradation of lignin-derived monoaromatics in Thermus oshimai JL-2″ Applied and Environmental Microbiology, 87(11) e01589-20, 2021.00, doi: 10.1128/AEM.01589-20

Mpofu E, Alias A, Tomita K, Suzuki-Minakuchi C, Tomita K, Chakraborty J, Malon M, Ogura Y, Takikawa H, Okada K, Kimura T, Nojiri H “Azoxystrobin amine: A novel azoxystrobin degradation product from Bacillus licheniformis strain TAB7″ Chemosphere, 273(-) 129663, 2021.06, doi: 10.1016/j.chemosphere.2021.129663

Laothamteep N, Kawano H, Vejarano F, Suzuki-Minakuchi C, Shintani M, Nojiri H, Pinyakong O “Effects of environmental factors and coexisting substrates on PAH degradation and transcriptomic responses of the defined bacterial consortium OPK” Environmental Pollution, 277(-) 116769, 2021.05, doi: 10.1016/j.envpol.2021.116769

Nanami Sakata, Takako Ishiga, Shunsuke Masuo, Yoshiteru Hashimoto, Yasuhiro Ishiga “Coronatine contributes to Pseudomonas cannabina pv. alisalensis virulence by overcoming both stomatal and apoplastic defenses in dicot and monocot plants” Molecular Plant-Microbe Interactions, x(-) xx-yy, 2021.08, doi: 10.1094/MPMI-09-20-0261-R

Takuto Kumano, Sanae Hori, Satomi Watanabe, Yuzu Terashita, Hong Yang Yu, Yoshiteru Hashimoto, Toshiya Senda, Miki Senda, Michihiko Kobayashi “FAD-dependent C-glycoside–metabolizing enzymes in microorganisms: Screening, characterization, and crystal structure analysis” Proceedings of the National Academy of Sciences, 118(40) e2106580118, 2021.10, doi: 10.1073/pnas.2106580118

 

Iino, T., Oshima, K., Hattori, M., Ohkuma, M., and Amachi, S. “Iodidimonas gelatinilytica sp. nov., aerobic iodide-oxidizing bacteria isolated from brine water and surface seawater” Antonie van Leeuwenhoek. 114: 625–631. 2021. PMID:33761033.

Suzuki-Hashido, N., Tsuchida, S., Hayakawa, T., Sakamoto, M., Azumano, A., Seino, S., Matsuda, I., Ohkuma, M., and Ushida, K. “Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus)” Int. J. Syst. Evol. Microbiol. 71: 004787. 2021. PMID: 33906706.

Tohno, M., Tanizawa, Y., Kojima, Y., Sakamoto, M., Ohkuma, M., and Kobayashi, H. “Lactobacillus cortices sp. nov., isolated from hardwood bark”  Int. J. Syst. Evol. Microbiol. 71(7): 004882. 2021. PMID: 34264810.

Saeng-in P, Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S. “Actinoplanes lichenicola sp. nov., and Actinoplanes ovalisporus sp. nov., isolated from lichen in Thailand” Int. J. Syst. Evol. Microbiol. 71(7): 004921. doi: 10.1099/ijsem.0.004921. 2021. PMID: 34319866

Kobayashi, H., Tanizawa, Y., Sakamoto, M., Ohkuma, M., and Tohno, M. “Taxonomic status of the species Clostridium methoxybenzovorans Mechichi et al. 1999” Int. J. Syst. Evol. Microbiol. 71: 004951. 2021. PMID:34379581.

Sakamoto, M., Ikeyama, N., Toyoda, A., Murakami, T., Mori, H., Morohoshi, S., Kunihiro, T., Iino, T., and Ohkuma, M. “Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces” Microbiol. Immunol. 65: 245-256. 2021. PMID: 33913539.

Ogata, Y., Sakamoto, M., Ohkuma, M., Hattori, M., and Suda, W. “Complete genome sequence of Longicatena caecimuris strain 3BBH23, isolated from healthy japanese feces” Microbiol. Resour. Announc. 10: e00282-21. 2021. PMID:34016676.

Kato S, Ohkuma M. “A Single Bacterium Capable of Oxidation and Reduction of Iron at Circumneutral pH. Microbiol. Spectr. 9(1): e0016121. doi: 10.1128/Spectrum.00161-21. 2021. PMID: 34431720

Endoh, R., Horiyama, M., and Ohkuma, M. “D-Fructose assimilation and fermentation by yeasts belonging to saccharomycetes: rediscovery of universal phenotypes and elucidation of fructophilic behaviors in Ambrosiozyma platypodis and Cyberlindnera americana” Microorganisms. 9: 758. 2021. PMID:33916327.

Ikeyama, N., Sakamoto, M., Ohkuma, M., Hiramoto, S., Wang, J., Tone, S., and Shiiba, K. “Fecal microbiota perspective for evaluation of prebiotic potential of bamboo hemicellulose hydrolysate in mice: A preliminary study” Microorganisms. 9: 888. 2021. PMID:33919296.

 

Shimamori Y, Pramono AK, Kitao T, Suzuki T, Aizawa SI, Kubori T, Nagai H, Takeda S, Ando H “Isolation and Characterization of a Novel Phage SaGU1 that Infects Staphylococcus aureus Clinical Isolates from Patients with Atopic Dermatitis” Current Microbiology, 78(4) 1267-1276, 2021.04,  doi: 10.1007/s00284-021-02395-y

Naradasu, D., Miran, W., Sharma, S., Takenawa, S., Soma, T., Nomura, N.Toyofuku, M., Okamoto, A. “Biogenesis of Outer Membrane Vesicles Concentrates the Unsaturated Fatty Acid of Phosphatidylinositol in Capnocytophaga ochraceaFrontiers in Microbiology, 12(-) 682685, 2021.05, doi: 10.3389/fmicb.2021.682685

Miho Hirai, Yoshihiro Takaki, Fumie Kondo, Masayuki Horie, Syun-ichi Urayama, Takuro Nunoura “RNA viral metagenome analysis from subnanogram dsRNA using fragmented and primer ligated dsRNA sequencing (FLDS)” Microbes and Environments, 36(2) ME20152, 2021.05, doi: 10.1264/jsme2.ME20152

Pamela Gan, Ryoko Hiroyama, Ayako Tsushima, Sachiko Masuda, Arisa Shibata, Akiko Ueno, Naoyoshi Kumakura, Mari Narusaka, Trinh Xuan Hoat, Yoshihiro Narusaka, Yoshitaka Takano, Ken Shirasu “Telomeres and a repeat-rich chromosome encode effector gene clusters in plant pathogenic Colletotrichum fungi” Environmental Microbiology, xx(-) xxx-yyy, 2021.03, doi: 10.1111/1462‐2920.15490