A01班
L. Ge, X. Ye, B. Chen, C. Liu, H. Guo, F. Sassa, K. Hayashi “Chemiresistor sensor matrix prepared by full-printing processes” Flexible and Printed Electronics, 6(1) 15013, 2021.03, doi: 10.1088/2058-8585/abec19

Mitsuru Yasuda, Norio Takeshita, and Shinsuke Shigeto, “Deuterium-labeled Raman tracking of glucose accumulation and protein metabolic dynamics in Aspergillus nidulans hyphal tips” Scientific Reports, 11(-) 1279, 2021.01, doi: 10.1038/s41598-020-80270-9

Hiroto Horiue, Mai Sasaki, Yuki Yoshikawa, Masanori Toyofuku, and Shinsuke Shigeto “Raman spectroscopic signatures of carotenoids and polyenes enable label-free visualization of microbial distributions within pink biofilms” Scientific Reports, 10(-) 7704, 2020.05, doi: 10.1038/s41598-020-64737-3

Shogo Toda, Naoya Yanagita, Efat Jokar, Eric Wei-Guang Diau, and Shinsuke Shigeto “Inter- and Intragrain Inhomogeneity in 2D Perovskite Thin Films Revealed by Relative Grain Orientation Imaging Using Low-Frequency Polarized Raman Microspectroscopy” The Journal of Physical Chemistry Letters, 11(10) 3871-3876, 2020.05, doi: 10.1021/acs.jpclett.0c00992

Takayuki Hiraoka and Shinsuke Shigeto “Interactions of water confined in a metal-organic framework as studied by a combined approach of Raman, FTIR, and IR electroabsorption spectroscopies and multivariate curve resolution analysis” Physical Chemistry Chemical Physics, 22(32) 17798-17806, 2020.08, doi: 10.1039/D0CP02958K

Yuki Yoshikawa and Shinsuke Shigeto “A Simple Calibration Method of Anti-Stokes-Stokes Raman Intensity Ratios Using the Water Spectrum for Intracellular Temperature Measurements” Applied Spectroscopy, 74(10) 1295-1300, 2020.10, doi: 10.1177/0003702820933908

重藤真介 「微生物1細胞および集団のラマン分光イメージング」生物工学, 98(7) 353-356, 2020.07, pdf

Nagakubo, T., Tahara YO, Miyata M, Nomura N, Toyofuku M “Mycolic acid-containing bacteria trigger distinct types of membrane vesicles through different route” iScience, 24(1) 102015, 2021.01, doi: 10.1016/j.isci.2020.102015

Komaba K, Nomura N, Goto H “Electrochemical polymerization in a biological communication material” International Journal of Polymeric Materials and Polymeric Biomaterials, -(-) -, 2020.09, doi: 10.1080/00914037.2020.1809408

Morinaga, K., Nagakubo, T., Nomura, N., Toyofuku, M. “Involvement of membrane vesicles in long-chain-AHL delivery in Paracoccus species” Environmental Microbiology Reports, 12(3) 355-360, 2020.04, doi: 10.1111/1758-2229.12843

Inaba T, Obana, N., Habe, H., and Nomura, N. “Biofilm Formation by Streptococcus mutans is Enhanced by Indole via the Quorum Sensing Pathway” Microbes and Environments, 35(2) ME19164 ,2020.04, doi: 10.1264/jsme2.ME19164

Tomohiro Hirayama, Kyosuke Takabe, Tatsunori Kiyokawa, Nobuhiko Nomura, and Yutaka Yawata “Reconstruction of Single-Cell Innate Fluorescence Signature by Confocal Microscopy” Journal of Visualised Experiments, 159(-) e61120, 2020.05, doi: 10.3791/61120

Nguyen, B.V.G., Nagakubo, T., Toyofuku, M., Nomura, N., and Utada, A.S. “Synergy between Sophorolipid Biosurfactant and SDS Increases the Efficiency of P. aeruginosa Biofilm Disruption” Langmuir, 36(23) 6411-6420, 2020.06, doi: 10.1021/acs.langmuir.0c00643

Yang, J., Yang, Y., Ishii, M., Nagata, M., Aw, W., Obana, N., Tomita, M., Nomura, N., and Fukuda, S. “Does the Gut Microbiota Modulate Host Physiology through Polymicrobial Biofilms?” Microbes and Environments, 35(3) ME20037, 2020.06, doi: 10.1264/jsme2.ME20037

Obana, N., Nakamura, K., and Nomura, N. “Temperature-regulated heterogeneous extracellular matrix gene expression defines biofilm morphology in Clostridium perfringens” NPJ Biofilms and Microbiomes, 6(1) 29, 2020.07, doi: 10.1038/s41522-020-00139-7

Nagasawa, R., Sato, T., Nomura, N., Nakamura, T., and Senpuku, H. “Potential risk to spread resistant genes within the extracellular DNA-dependent biofilm of Streptococcus mutans in response to cell envelope stress induced by sub-MIC of bacitracin” Applied and Environmental Microbiology, 86(16) e00770-20, 2020.08, doi: 10.1128/AEM.00770-20

Abeysinghe, G., Kuchira, M., Kudo, G., Masuo, S., Ninomiya, A., Takahashi, K., Utada, A.S., Hagiwara, D., Nomura, N., Takaya, N., Obana, N., and Takeshita, N. “Fungal mycelia and bacterial thiamine establish a mutualistic growth mechanism” Life Science Alliance, 3(12) e202000878, 2020.09, doi: 10.26508/lsa.202000878

Nagasawa, R., Yamamoto, T., Utada, A.S., Nomura, N., and Obana, N. “Competence-stimulating-peptide-dependent localized cell death and extracellular DNA production in Streptococcus mutans biofilms” Applied and Environmental Microbiology, 86(23) AEM02080-20, 2020.11, doi: 10.1128/AEM.02080-20

Sakamoto, S., Nobu, M.K., Mayumi, D., Tamazawa, S., Kusada, H., Yonebayashi, H., Iwama, H., Ikarashi, M., Wakayama, T., Maeda, H., Sakata, S., Tamura, T., Nomura, N., Kamagata, Y., and Tamaki, H. “Koleobacter methoxysyntrophicus gen. nov., sp. nov., a novel anaerobic bacterium isolated from deep subsurface oil field and proposal of Koleobacteraceae fam. nov. and Koleobacterales ord. nov. within the class Clostridia of the phylum Firmicutes” Systematic Applied Microbiology, 44(1) 126154, 2021.01, doi: 10.1016/j.syapm.2020.126154

Vitale, A., Paszti, S., Takahashi, K., Toyofuku, M., Pessi ,G., and Eberl, L. “Mapping of the Denitrification Pathway in Burkholderia thailandensis by Genome-Wide Mutant Profiling” Journal of Bacteriology, 202(23) e00304-20, 2020.11, doi: 10.1128/JB.00304-20

Yamamoto K, Kusada H, Kamagata Y, Tamaki H “Parallel evolution of enhanced biofilm formation and phage-resistance in Pseudomonas aeruginosa during adaptation process in spatially heterogeneous environments” Microorganisms, 9(3) 569, 2021.03, doi: 10.3390/microorganisms9030569

Tomoki Iwashita, *Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Yan Li, Tadashi Toyama, Yoichi Kamagata, Kazuhiro Mori “Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis” Microbes and Environments, 35(3) ME20081, 2020.07, doi: 10.1264/jsme2.ME20081

Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Ryosuke Nakai, Yasuko Yoneda, Ayaka Makino, Tadashi Toyama, Yoichi Kamagata, Masaaki Morikawa, Kazuhiro Mori “Isolation and Characterization of Novel Plant Growth-Promoting Bacteria from the Fronds of Duckweed” Jpn J. Water Treat. Biol., 57(1) 1-9, 2021.01, doi: 10.2521/jswtb.57.1

Yu Nakajima, Keiichi Kojima, Yuichiro Kashiyama, Satoko Doi, Ryosuke Nakai, Yuki Sudo, Kazuhiro Kogure, Susumu Yoshizawa “Bacterium lacking a known gene for retinal biosynthesis constructs functional rhodopsins” Microbes and Environments, 35(4) ME20085, 2020.12, doi: 10.1264/jsme2.ME20085

David W Waite, Maria Chuvochina, Claus Pelikan, Donovan H Parks, Pelin Yilmaz, Michael Wagner, Alexander Loy, Takeshi Naganuma, Ryosuke Nakai, William B Whitman, Martin W Hahn, Jan Kuever, Philip Hugenholtz “Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities” International Journal of Systematic and Evolutionary Microbiology, 70(11) 5972-6016, 2020.12, doi: 10.1099/ijsem.0.004213

Sho Shimada*, Ryosuke Nakai*, Kotaro Aoki, Norifumi Shimoeda, Giichiro Ohno, Yasunari Miyazaki, Sakae Kudoh, Satoshi Imura, Kentaro Watanabe, Yoshikazu Ishii, and Kazuhiro Tateda (*equal contribution) “Complete genome sequence of novel psychrotolerant Legionella strain TUM19329, isolated from Antarctic lake sediment” Microbiology Resource Announcements, 9(16) e00253-20,,2020.04, doi: 10.1128/MRA.00253-20

Ryosuke Nakai  “Size Matters: Ultra-small and Filterable Microorganisms in the Environment” Microbes and Environments, 35(2) ME20025, 2020.06, doi: 10.1264/jsme2.ME20025

Ryosuke Nakai, Takeshi Naganuma, Nozomi Tazato, Sho Morohoshi, and Tomomi Koide “Cell Plasticity and Genomic Structure of a Novel Filterable Rhizobiales Bacterium that Belongs to a Widely Distributed Lineage” Microorganisms, 8(9) 1373, 2020.09, doi: 10.3390/microorganisms8091373

Shunsuke Tomita, Hiroyuki Kusada, Naoshi Kojima, Sayaka Ishihara, Koyomi Miyazaki, Hideyuki Tamaki, and Ryoji Kurita “Polymer-based chemical nose systems for optical pattern recognition of gut microbiota” ChemRxiv, 2020.07, doi: 10.26434/chemrxiv.12649826.v1

Ren-Chao Zheng, Xia-Feng Lu, Hiroya Tomita, Shin-Ichi Hachisuka, Yu-Guo Zheng, Haruyuki Atomi “TK1211 encodes an amino acid racemase towards leucine and methionine in the hyperthermophilic archaeon Thermococcus kodakarensis” Journal of Bacteriology, 203(7) e00617-20, 2021.03, doi: 10.1128/JB.00617-20

Gabriel V Pereira, Ahmed M Abdel-Hamid, Soumajit Dutta, Corina N D’Alessandro-Gabazza, Daniel Wefers, Jacob A Farris, Shiv Bajaj, Zdzislaw Wawrzak, Haruyuki Atomi, Roderick I Mackie, Esteban C Gabazza, Diwakar Shukla, Nicole M Koropatkin, Isaac Cann “Degradation of complex arabinoxylans by human colonic Bacteroidetes” Nature Communications, 12(1) 459, 2021.01, doi: 10.1038/s41467-020-20737-5

Jian-Qiang Jin, Shin-Ichi Hachisuka, Takaaki Sato, Tsuyoshi Fujiwara, Haruyuki Atomi “Identification of a structurally novel lipoyl synthase in the hyperthermophilic archaeon Thermococcus kodakarensis” Applied and Environmental Microbiology, 86(23) e01359-20, 2020.11, doi: 10.1128/AEM.01359-20

Isaac Cann, Gabriel V. Pereira, Ahmed M. Abdel-Hamid, Heejin Kim, Daniel Wefers, Boniface B. Kayang, Tamotsu Kanai, Takaaki Sato, Rafael C. Bernardi, Haruyuki Atomi, and Roderick I. Mackie “Thermophilic degradation of hemicellulose, a critical feedstock in the production of bioenergy and other value-added products” Applied and Environmental Microbiology, 86(7) e02296-19, 2020.03, doi: 10.1128/AEM.02296-19 (Review article)

Takaaki Sato, Daisuke Takada, Takashi Itoh, Moriya Ohkuma, and Haruyuki Atomi “Integration of large heterologous DNA fragments into the genome of Thermococcus kodakarensis” Extremophiles, 24(3) 339-353, 2020.05, doi: 10.1007/s00792-020-01159-z（A02-4班との共同）

Hugo Maruyama, Eloise I Prieto, Takayuki Nambu, Chiho Mashimo, Kosuke Kashiwagi, Toshinori Okinaga, Haruyuki Atomi, and Kunio Takeyasu “Different proteins mediate step-wise chromosome architectures in Thermoplasma acidophilum and Pyrobaculum calidifontis” Frontiers in Microbiology, 11(-) 1247, 2020.06, doi: 10.3389/fmicb.2020.01247

Alison E. Murray, John Freudenstein, Simonetta Gribaldo, Roland Hatzenpichler, Philip Hugenholtz, Peter Kämpfer, Konstantinos T. Konstantinidis, Christopher E. Lane, R. Thane Papke, Donovan H. Parks, Ramon Rossello-Mora, Matthew B. Stott, Iain C. Sutcliffe, J. Cameron Thrash, Stephanus N. Venter, William B. Whitman, Silvia G. Acinas, Rudolf I. Amann, Karthik Anantharaman, Jean Armengaud, Brett J. Baker, Roman A. Barco, Helge B. Bode, Eric S. Boyd, Carrie L. Brady, Paul Carini, Patrick S. G Chain, Daniel R. Colman, Kristen M. DeAngelis, Maria Asuncion de Los Rios, Paulina Estrada-de Los Santos, Christopher A. Dunlap, Jonathan A. Eisen, David Emerson, Thijs J. G. Ettema, Damien Eveillard, Peter R. Girguis, Ute Hentschel, James T. Hollibaugh, Laura A. Hug, William P. Inskeep, Elena P. Ivanova, Hans-Peter Klenk, Wen-Jun Li, Karen G. Lloyd, Frank E Löffler, Thulani P. Makhalanyane, Duane P. Moser, Takuro Nunoura, Marike Palmer, Victor Parro, Carlos Pedrós-Alió, Alexander J. Probst, Theo H. M. Smits, Andrew D. Steen, Emma T. Steenkamp, Anja Spang, Frank J. Stewart, James M. Tiedje, Peter Vandamme, Michael Wagner, Feng-Ping Wang, Brian P. Hedlund, and Anna-Louise Reysenbach “Roadmap for naming uncultivated Archaea and Bacteria” Nature Microbiology, 5(8) 987-994, 2020.08, doi: 10.1038/s41564-020-0733-x (Consensus Statement)

布浦拓郎、力石嘉人、跡見晴幸「マルチオミクス解析による好熱性水素酸化細菌からの可逆的TCA 回路の発見」低温科学, 79 31-36, 2021.03, pdf

島村繁、澄田智美、布浦拓郎「オービトラップ質量分析計を用いたアミノ酸解析の可能性」低温科学, 79 37-42, 2021.03, pdf

澄田智美、島村繁、布浦拓郎「Orbitrap Fusionを用いたCE-MSと四重極GC-MSでのアミノ酸分析の比較」低温科学, 79 43-49, 2021.03, pdf

Yuichiro Hashiguchi, Takeaki Tezuka, Yoshihiro Mouri, Kenji Konishi, Azusa Fujita, Aiko Hirata, and Yasuo Ohnishi “Regulation of Sporangium Formation, Spore Dormancy, and Sporangium Dehiscence by a Hybrid Sensor Histidine Kinase in Actinoplanes missouriensis: Relationship with the Global Transcriptional Regulator TcrA” Journal of Bacteriology, 202(21) e00228-20, 2020.11, doi: 10.1128/JB.00228-20

Yuichiro Hashiguchi, Takeaki Tezuka, Yasuo Ohnishi “Involvement of three FliA-family sigma factors in the sporangium formation, spore dormancy and sporangium dehiscence in Actinoplanes missouriensis” Molecular Microbiology, 113(6) 1170-1188, 2020.06, doi: 10.1111/mmi.14485

Ratchanee Mingma, Yuki Inahashi, Atsuko Matsumoto, Yoko Takahashi, and Kannika Duangmal “Amycolatopsis pithecelloba sp. nov., a novel actinomycete isolated from roots of Pithecellobium dulce in Thailand” Journal of Antibiotics, 73(4) 230-235, 2020.04, doi: 10.1038/s41429-019-0271-z

Nattaporn Klykleung, Masahiro Yuki, Takuji Kudo, Moriya Ohkuma, Wongsakorn Phongsopitanun, Yuki Inahashi, Atsuko Matsumoto, and Somboon Tanasupawat “Streptomyces mimosae sp. nov., an endophytic actinomycete isolated from the root of Mimosa pudica in Thailand” International Journal of Systematic and Evolutionary Microbiology, 70(5) 3316-3322, 2020.05, doi: 10.1099/ijsem.0.004170（A02-4班との共同）

A02班

Ochi K, Tokuda M, Yanagiya K, Suzuki-Minakuchi C, Nojiri H, Yuki M, Ohkuma M, Kimbara K, Shintani M “Oxygen concentration affects frequency and range of transconjugants for the incompatibility (Inc) P-1 and P-7 plasmids pBP136 and pCAR1” Bioscience Biotechnology and Biochemistry, 85(4) 1005-1015, 2021.03, doi: 10.1093/bbb/zbaa118 （A02-4班との共同）

Tokuda, M., Suzuki, H., Yanagiya, K., Yuki, M., Inoue, K., Ohkuma, M., Kimbara, K., and Shintani, M. “Determination of plasmid pSN1216-29 host range and the similarity in oligonucleotide composition between plasmid and host chromosomes” Frontiers in Microbiology, 11(-) 1187, 2020.06, doi: 10.3389/fmicb.2020.01187（A02-4班との共同）

Shintani, M., Nour, E., Elsayed, T.S.R., Blau, K., Wall, I., Jechalke, S., Spröer, C., Bunk, B., Overmann, J., and Smalla, K. “Plant species-dependent increased abundance and diversity of IncP-1 plasmids in the rhizosphere -new insights into their role and ecology” Frontiers in Microbiology, 11(-) 590776, 2020.11, doi: 10.3389/fmicb.2020.590776

Nakamura, T., Suzuki-Minakuchi, C., Kawano, H., Kanesaki, Y., Kawasaki, S., Okada, and K., Nojiri, H. “H-NS family proteins drastically change their targets in response to the horizontal transfer of the catabolic plasmid pCAR1” Frontiers in Microbiology, 11(-) 1099, 2020.05, doi: 10.3389/fmicb.2020.01099

Kawano, H., Suzuki-Minakuchi, C., Sugiyama, D., Watanabe, N., Takahashi, Y., Okada, K., and Nojiri, H. “A novel small RNA on the Pseudomonas putida KT2440 chromosome is involved in the fitness cost imposed by IncP-1 plasmid RP4” Frontiers in Microbiology, 11(-) 1328, 2020.06, doi: 10.3389/fmicb.2020.01328

Sayumi Fukuda, Riho Yamamoto, Naoki Yanagisawa, Naoki Takaya, Yoshikatsu Sato, Meritxell Riquelme, Norio Takeshita “Trade-off between Plasticity and Velocity in Mycelial Growth” mBio, 12(2) e03196-20, 2021.03, doi: 10.1128/mBio.03196-20

Mizuki Yasui, Ken Oda, Shunsuke Masuo, Shuji Hosoda, Takuya Katayama, Jun-Ichi Maruyama, Naoki Takaya, Norio Takeshita “Invasive growth of Aspergillus oryzae in rice koji and increase of nuclear number” Fungal Biology and Biotechnology, 7(-) 8, 2020.06, doi: 10.1186/s40694-020-00099-9

Hiroshi Kanazawa, Sayoko Ozaki, Yuki Doi, Shunsuke Masuo, Naoki Takaya “Symbiotic riboflavin degradation by Microbacterium and Nocardioides bacteria” Bioscience Biotechnology and Biochemistry, 84(5) 1056-1061, 2020.05, doi: 10.1080/09168451.2020.1715783

Aniruddha Nag, Mohammad Asif Ali, Hideo Kawaguchi, Shun Saito, Yukie Kawasaki, Shoko Miyazaki, Hirotoshi Kawamoto, Deddy Triyono Nugroho Adi, Kumiko Yoshihara, Shunsuke Masuo, Yohei Katsuyama, Akihiko Kondo, Chiaki Ogino, Naoki Takaya, Tatsuo Kaneko, Yasuo Ohnishi “Ultrahigh Thermoresistant Lightweight Bioplastics Developed from Fermentation Products of Cellulosic Feedstock” Advanced Sustainable Systems, 5(1), 2000193, 2020.05, doi: 10.1002/adsu.202000193

Susumu Morigasaki, Akinori Umeyama, Yusuke Kawano, Yasushi Aizawa, and Iwao Ohtsu “Defect of RNA pyrophosphohydrolase RppH enhances fermentative production of L-cysteine in Escherichia coli” Journal of General and Applied Microbiology, 66(6) 307-314, 2020.08, doi: 10.2323/jgam.2019.12.004

Tomoyuki Kamide, Shun Takusagawa, Naoyuki Tanaka, Yasushi Ogasawara, Yusuke Kawano, Iwao Ohtsu, Yasuharu Satoh, Tohru Dairi “High production of ergothioneine in Escherichia coli using the sulfoxide synthase from Methylobacterium strains” Journal of Agricultural and Food Chemistry, 68(23) 6390-6394, 2020.07, doi: 10.1021/acs.jafc.0c01846

Yoshiki Matsuda, Nobuyuki Ozawa, Takiko Shinozaki, Ken-Ichi Wakabayashi, Kosuke Suzuki, Yusuke Kawano, Iwao Ohtsu, Yoshitaka Tatebayashi “Ergothioneine, a metabolite of the gut bacterium Lactobacillus reuteri, protects against stress-induced sleep disturbances” Translational Psychiatry, 10(1) 170, 2020.05, doi: 10.1038/s41398-020-0855-1

大津厳生「ヒトの健康に必須なエルゴチオネインの発酵生産法の確立と評価系Sulfer index」JATAFFジャーナル , 8(9) 30-35, 2020.09

Kazumori Mise, and Wataru Iwasaki “Environmental atlas of prokaryotes enables powerful and intuitive habitat-based analysis of community structures” iScience, 23(-) 101624, 2020.10, doi: 10.1016/j.isci.2020.101624

Kaori Motoki, Tomo-o Watsuji, Yoshihiro Takaki, Ken Takai, and Wataru Iwasaki “Metatranscriptomics by in situ RNA stabilization directly and comprehensively revealed episymbiotic microbial communities of deep-sea squat lobsters” mSystems, 5(-) e00551-20,  2020.09, doi: 10.1128/mSystems.00551-20

Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S. “Nocardia terrae sp. nov., an actinomycete isolated from soil in Thailand” Archives of Microbiology, 203(3) 1071-1077, 2021.01, doi: 10.1007/s00203-020-02107-3

Kato S, Ohnishi M, Nagamori M, Yuki M, Takashina T, Ohkuma M, Itoh T “Conexivisphaera calida gen. nov., sp. nov., a thermophilic sulfur- and iron-reducing archaeon, and proposal of Conexivisphaeraceae fam. nov., Conexivisphaerales ord. nov., and Conexivisphaeria class. nov. in the phylum Thaumarchaeota” International Journal of Systematic and Evolutionary Microbiology, 71(1) 4595, 2021.01, doi: 10.1099/ijsem.0.004595

Shi W, Sun Q, Fan G, Sugawara H, Ohkuma M, Itoh T, Zhou Y, Cai M, Kim SG, Lee JS, Sedlacek I, Arahal D, Lucena T, Kawasaki H, Evtushenko L, Weir B, Alexander S, Dénes D, Tanasupawat S, Eurwilaichitr L, Ingsriswang S, Gomez-Gil B, Hazbón M, Riojas M, Suwannachart C, Su Y; Vandamme P, Peng F, Chen Z, Liu D, Sun X, Zhang X, Zhou Y, Meng Z, Wu L, Ma J. “gcType: a high-quality type strain genome database for microbial phylogenetic and functional research” Nucleic Acids Research, 49(D1) D694-D705, 2021.01, doi: 10.1093/nar/gkaa957

Tanno H, Fujii T, Hirano K, Maeno S, Tonozuka T, Sakamoto M, Ohkuma M, Tochio T, Endo A “Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers” Gut Microbes, 13(1) e1869503, 2021.01, doi: 10.1080/19490976.2020.1869503

Songsumanus A, Kuncharoen N, Kudo T, Yuki M, Ohkuma M, Igarashi Y., Tanasupawat S. “Actinomadura decatromicini sp. nov., isolated from mountain soil in Thailand” Journal of Antibiotics, 74(1) 51-58, 2021.01, doi:  10.1038/s41429-020-0353-y

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W “Complete Genome Sequence of Alistipes indistinctus strain 2BBH45 Isolated from Healthy Japanese Feces” Microbiology Resource Announcements, 10(2) e01284-20, 2021.01, doi: 10.1128/MRA.01284-20

Ikeyama N, Ohkuma M, Sakamoto M “Stress response of Mesosutterella multiformis mediated by nitrate reduction” Microorganisms, 8(12) 2003, 2020.12, doi: 10.3390/microorganisms8122003

Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H “Haloarcula mannanilytica sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt” International Journal of Systematic and Evolutionary Microbiology, 70(12) 6331-6337, 2020.12, doi: 10.1099/ijsem.0.004535

Sakamoto M, Ikeyama N, Toyoda A, Murakami T, Mori H, Ohkuma M “Complete Genome Sequence of Faecalibacillus intestinalis JCM 34082, Isolated from Feces of a Healthy Japanese Female” Microbiology Resource Announcements, 9(50) e01160-20, 2020.12, doi: 10.1128/MRA.01160-20

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W “Complete Genome Sequence of Adlercreutzia sp. strain 8CFCBH1, a Potent Producer of Equol, Isolated from Healthy Japanese Feces “Microbiology Resource Announcements, 9(49) e01240-20, 2020.12, doi: 10.1128/MRA.01240-20

Takashima M, Manabe R, Ohkuma M “Draft Genome Sequence of Oleaginous Yeast Saitozyma sp. JCM 24511 Isolated from Soil on Iriomote Island, Okinawa, Japan “Microbiology Resource Announcements, 9(48) e00196-20, 2020.11, doi: 10.1128/MRA.00196-20

Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S “Nocardia aurantiaca sp. nov., isolated from soil in Thailand” International Journal of Systematic and Evolutionary Microbiology, 70(10) 5432-5438, 2020.10, doi: 10.1099/ijsem.0.004432

Ikeyama N, Murakami T, Toyoda A, Mori H, Iino T, Ohkuma M, Sakamoto M “Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron” MicrobiologyOpen, 9(10) e1111, 2020.10, doi: 10.1002/m+Q12bo3.1111

Nishimura Y, Kume K, Sonehara K, Tanifuji G, Shiratori T, Hashimoto T, Ishida K, Inagaki Y, Ohkuma M “Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista” Frontiers in Ecology and Evolution, 8(-) 140, 2020.06, doi: 10.3389/fevo.2020.00140

Bourguignon, T., Kinjo, Y., Villa-Mart?n, P., Coleman, N.V., Tang, Q., Arab, D.A., Wang, Z., Tokuda, G., Hongoh, Y., Ohkuma, M., Ho, S.Y.W., Pigolotti, S., and Lo, N. “Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes” Current Biology, 30(19) 3848-3855, 2020.10, doi: 10.1016/j.cub.2020.07.034（公募班本郷Gと共同）

Takaki, K., Tahara, Y.O., Nakamichi, N., Hasegawa, Y., Shintani, M., Ohkuma, M., Miyat, M. Futamata, H., and Tashiro, Y. “Multilamellar and Multivesicular Outer Membrane Vesicles Produced by a Buttiauxella agrestis tolB Mutant” Applied and Environmental Microbiology, 86(20) e01131-20, 2020.10, doi: 10.1128/AEM.01131-20（計画班A02-1と共同）

Nishimura, Y., Otagiri, M., Yuki, M., Shimizu, M., Inoue, J., Moriya, S., and Ohkuma, M. “Division of functional roles for termite gut protists revealed by single-cell transcriptomes” The ISME Journal, 14(10) 2449-2460, 2020.10, doi: 10.1038/s41396-020-0698-z

Takeuchi, M., Kuwahara, H., Murakami, T., Kajitani, R., Toyoda, A., Itoh, T., Ohkuma, M., and Hongoh, Y. “Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut” The ISME Journal, 14(9) 2288-2301, 2020.09, doi: 10.1038/s41396-020-0688-1（公募班本郷Gと共同）

Shirouzu, T., Takamatsu, S., Hashimoto, A., Meeboon, J., and Ohkuma, M. “Phylogenetic overview of the Erysiphaceae based on nrDNA and MCM7 sequences” Mycoscience, 61(5) 249-258, 2020.09, doi: 10.1016/j.myc.2020.03.006

Liou, J.S., Huang, C.H., Ikeyama, N., Lee, A.Y., Chen, I.C., Blom, J., Chen, C.C., Chen, C.H., Lin, Y.C., Hsieh, S.Y., Huang, L., Ohkuma. M., Watanabe, K., Sakamoto, M. “Prevotella hominis sp. nov., isolated from human faeces” International Journal of Systematic and Evolutionary Microbiology, 70(8) 4767-4773, 2020.08, doi: 10.1099/ijsem.0.004342

Noda, S., Koyama, F., Aihara, C., Ikeyama, N., Yuki, M., Ohkuma, M., Sakamoto, M. “Lactococcus insecticola sp. nov. and Lactococcus hodotermopsidis sp. nov., isolated from the gut of the wood-feeding lower termite Hodotermopsis sjostedti” International Journal of Systematic and Evolutionary Microbiology, 70(8) 4515-4522, 2020.08, doi: 10.1099/ijsem.0.004309

Ikeyama, N., Toyoda, A., Morohoshi, S., Kunihiro, T., Murakami, T., Mori, H., Iino, T., Ohkuma, M., Sakamoto, M. “Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov.” International Journal of Systematic and Evolutionary Microbiology, 70(6) 3664-3664, 2020.06, doi: 10.1099/ijsem.0.004215

Sorokin, D.Y., Merkel, A.Y., Messina, E., Yakimov, M.M., Itoh, T., Mesbah, N.M., Wiegel, J., and Oren, A. “Reclassification of the genus Natronolimnobius: proposal of two new genera, Natronolimnohabitans gen. nov. to accommodate Natronolimnobius innermongolicus and Natrarchaeobaculum gen. nov. to accommodate Natronolimnobius aegyptiacus and Natronolimnobius sulfurireducens” International Journal of Systematic and Evolutionary Microbiology, 70(5) 3399-3405, 2020.05, doi: 10.1099/ijsem.0.004186

Tanizawa, Y., Kobayashi, H., Nomura, M., Sakamoto, M., Arita, M., Nakamura, N., Ohkuma, M., and Tohno, M. “Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage” International Journal of Systematic and Evolutionary Microbiology, 70(5) 3111-3116, 2020.05, doi: 10.1099/ijsem.0.004138

Kobayashi, H., Tanizawa, Y., Sakamoto, M., Nakamura, Y., Ohkuma, M., and Tohno, M. “Reclassification of <i>Clostridium diolis</i> Biebl and Spröer 2003 as a later heterotypic synonym of <i>Clostridium beijerinckii</i> Donker 1926 (Approved Lists 1980) emend. Keis et al. 2001″ International Journal of Systematic and Evolutionary Microbiology, 70(4) 2463-2466, 2020.04, doi: 10.1099/ijsem.0.004059

Dekio, I., Sakamoto, M., Suzuki, T., Yuki, M., Kinoshita, S., Murakami, Y., and Ohkuma, M. “Cutibacterium modestum sp. nov., isolated from meibum of human meibomian glands, and emended descriptions of Cutibacterium granulosum and Cutibacterium namnetense” International Journal of Systematic and Evolutionary Microbiology, 70(4) 2457-2462, 2020.04, doi: 10.1099/ijsem.0.004058

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete Genome Sequence of Blautia producta JCM 1471T” Microbiology Resource Announcements, 9(17) e00141-20, 2020.04, doi: 10.1128/MRA.00141-20

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete Genome Sequence of Flavonifractor plautii JCM 32125T” Microbiology Resource Announcements, 9(17) e00135-20, 2020.04, doi: 10.1128/MRA.00135-20

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete genome sequence of Megamonas funiformis JCM 14723T” Microbiology Resource Announcements, 9(16) e00142-20, 2020.04, doi: 10.1128/MRA.00142-20

Tourlousse, D.M., Sakamoto, M., Miura, T., Narita, K., Ohashi, A., Uchino, Y., Yamazoe, A., Kameyama, K., Terauchi, J., Ohkuma, M., Kawasaki, H., and Sekiguchi, Y. “Complete genome sequence of Collinsella aerofaciens JCM 10188T” Microbiology Resource Announcements, 9(16) e00134-20, 2020.04, doi: 10.1128/MRA.00134-20

Kato, S., Itoh, T., and Ohkuma, M. “Complete Genome Sequence of Athalassotoga saccharophila Strain NAS-01, a Deep-Branching Thermophilic Lineage in the Phylum Thermotogae” Microbiology Resource Announcements, 9(16) e00322-20, 2020.04, doi: 10.1128/MRA.00322-20

“Itoh, T., Miura, T., Sakai, H., Kato, S., Ohkuma, M., and Takashina, T. “Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov.” International Journal of Systematic and Evolutionary Microbiology, 70(3) 1117-1121, 2020.03, doi: 10.1099/ijsem.0.003981

公募班
Yong Guo, Yusuke Takashima, Yoshinori Sato, Kazuhiko Narisawa, Hiroyuki Ohta, Tomoyasu Nishizawa “Mycoavidus sp. Strain B2-EB: Comparative genomics reveals minimal genomic features required by a cultivable Burkholderiaceae-related endofungal bacterium” Applied Environmental Microbiology, 86(18) e01018-20, 2020.09, doi: 10.1128/AEM.01018-20

Takashima, Y., Degawa, Y., Nishizawa, T., Ohta, H., and Narisawa, K. “Aposymbiosis of a Burkholderiaceae-Related Endobacterium Impacts on Sexual Reproduction of Its Fungal Host” Microbes and Environments, 35(2) ME19167, 2020.04, doi: 10.1264/jsme2.ME19167

Shimamori Y, Mitsunaka S, Yamashita H, Suzuki T, Kitao T, Kubori T, Nagai H, Takeda S, Ando H “Staphylococcal Phage in Combination with Staphylococcus epidermidis as a Potential Treatment for Staphylococcus aureus-Associated Atopic Dermatitis and Suppressor of Phage-Resistant Mutants” Viruses, 13(1) 7, 2020.12, doi: 10.3390/v13010007

Kawabata M, Matsuo H, Koito T, Murata M, Kubori T, Nagai H, Tagaya M, Arasaki K “Legionella hijacks the host Golgi-to-ER retrograde pathway for the association of Legionella-Containing vacuole with the ER” PLoS Pathogens, 17(3) e1009437, 2021.03, doi: 10.1371/journal.ppat.1009437

Hyunmin Kim, Tomoko Kubori, Kohei Yamazaki, Mi-Jeong Kwak, Suk-Youl Park, Hiroki Nagai, Joseph P Vogel, and Byung-Ha Oh “Structural Basis for Effector Protein Recognition by the Dot/Icm Type IVB Coupling Protein Complex” Nature Communications, 11(1) 2623, 2020.05, doi: 10.1038/s41467-020-16397-0

Tomoe Kitao, Hiroki Nagai, and Tomoko Kubori “Reversing Conventional and Unconventional Ubiquitination” Frontiers in Cellular and Infection Microbiology, 10(-) 448, 2020.08, doi: 10.3389/fcimb.2020.00448 (Review)

Tomoe Kitao, Kyoichiro Taguchi, Shintaro Seto, Kohei Arasaki, Hiroki Ando, Hiroki Nagai, and Tomoko Kubori “Legionella Manipulates Non-canonical SNARE Pairing Using a Bacterial Deubiquitinase” Cell Reports, 32(10) 108107, 2020.09, doi: 10.1016/j.celrep.2020.108107

W. Miran, D, Naradasu, A. Okamoto “Pathogens electrogenicity as a tool for in-situ metabolic activity monitoring and drug assessment in biofilms” iScience, 24(2) 102068, 2021.02, doi: 10.1016/j.isci.2021.102068

 Y. Tokunou, R. V. Lemos, S. Tsujimura, A. Okamoto, P. Ledezma, S. Freguia “Synechococcus and Other Bloom‐Forming Cyanobacteria Exhibit Unique Redox Signatures” ChemElectroChem, 8(2) 360-364, 2021.01, doi: 10.1002/celc.202001274

 J. Saito, X. Deng, A. Okamoto “Single-Cell Mass Spectroscopic Analysis for Quantifying Active Metabolic Pathway Heterogeneity in a Bacterial Population on an Electrode” Analytical Chemistry, 92(23) 15616-15623, 2020.11, doi: 10.1021/acs.analchem.0c03869

R.V. Lemos, S. Tsujimura, P. Ledezma, Y. Tokunou, A. Okamoto, and S. Freguia “Extracellular electron transfer by Microcystis aeruginosa is solely driven by high pH” Bioelectrochemistry, 137(-) 107637, 2020.09, doi: 10.1016/j.bioelechem.2020.107637

M. Shiibashi, X. Deng, W. Miran, and A. Okamoto “Mechanism of Anaerobic Microbial Corrosion Suppression by Mild Negative Cathodic Polarization on Carbon Steel” Environmental Science & Technology Letters, 7(9) 690-694, 2020.09, doi: 10.1021/acs.estlett.0c00383

S. Hirano, J. Saito, T. Yukawa, D. Sano, A. Okamoto, S. Okabe, M. Kitajima “Improvement of Electrochemical Conditions for Detecting Redox Reaction of K3 [Fe (CN) 6] toward the Application in Norovirus Aptasensor” Electrochemistry, 88(3) 205-209, 2020.05, doi: 10.5796/electrochemistry.20-00017

D. Naradasu, A. Guionet, T. Okinaga, T. Nishihara, A. Okamoto “Electrochemical Characterization of Current Producing Human Oral-pathogens by Whole-Cell Electrochemistry” ChemElectroChem, 7(9) 2012-2019, 2020.05, doi: 10.1002/celc.202000117

E. La Cava, A. Guionet, J. Saito, and A. Okamoto “Involvement of Proton Transfer for Carbon Dioxide Reduction Coupled with Extracellular Electron Uptake in Shewanella oneidensis MR-1″ Electroanalysis, 32(8) 1659-1663, 2020.04, doi: 10.1002/elan.201900686

D. Naradasu, A. Guionet, W. Miran, and A. Okamoto “Microbial current production from Streptococcus mutans correlates with biofilm metabolic activity” Biosensors and Bioelectronics, 162(-) 112236, 2020.04, doi: 10.1016/j.bios.2020.112236

X. Deng, N. Dohmae, A. H. Kaksonen, and A. Okamoto “Biogenic Iron Sulfide Nanoparticles to Enable Extracellular Electron Uptake in Sulfate-Reducing Bacteria” Angewandte Chemie German Edition, 132(15) 6051-6055, 2020.04, doi: 10.1002/ange.201915196 (International Edition; doi: 10.1002/anie.201915196)

S. Zhang, W. Miran, D. Naradasu, S. Guo, and A. Okamoto “A Human Pathogen Capnocytophaga Ochracea Exhibits Current Producing Capability” Electrochemistry, 88(3) 224-229, 2020.04, doi: 10.5796/electrochemistry.20-00021

X. Long and A. Okamoto “Outer membrane compositions enhance the rate of extracellular electron transport via cell-surface MtrC protein in Shewanella oneidensis MR-1″ Bioresource Technology, 320(part A) 124290, 2021.01, doi: 10.1016/j.biortech.2020.124290

X.Deng, J.Saito, A.Kaksonen, A. Okamoto “Enhancement of cell growth by uncoupling extracellular electron uptake and oxidative stress production in sediment sulfate-reducing bacteria” Environment International, 144(-) 106006, 2020.11, doi: 10.1016/j.envint.2020.106006

Tomoya Maeda, Junichiro Iwasawa, Hazuki Kotani, Natsue Sakata, Masako Kawada, Takaaki Horinouchi, Aki Sakai, Kumi Tanabe, Chikara Furusawa “High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli” Nature Communications, 11(-) 5970, 2020.11, doi: 10.1038/s41467-020-19713-w

 Yuto Chiba, Sayoko Oiki, Takashi Yaguchi, Syun-ichi Urayama, Daisuke Hagiwara “Discovery of divided RdRp sequences and a hitherto unknown genomic complexity in fungal viruses” Virus Evolution, 7(1) veaa101, 2021.01, doi: 10.1093/ve/veaa101

Syun-ichi Urayama, Nobutaka Doi, Fumie Kondo, Yuto Chiba, Yoshihiro Takaki, Miho Hirai, Yasutaka Minegishi, Daisuke Hagiwara, Takuro Nunoura “Diverged and active partitiviruses in lichen” Frontiers in Microbiology, 11(-) 561344, 2020.09, doi: 10.3389/fmicb.2020.561344

Daigo Nomoto, Tatsuhiko Tsunoda, Hideyuki Shigemori “Effects of clovamide and its related compounds on the aggregations of amyloid polypeptides” Journal of Natural Medicines, 75(2) 299-307, 2021.01, doi: 10.1007/s11418-020-01467-w

Chol Gyu Lee, Yasunori Baba, Ryoki Asano, Yasuhiro Fukuda, Chika Tada, Yutaka Nakai “Identification of bacteria involved in decomposition of lignocellulosic biomass treated with cow rumen fluid by metagenomic analysis” Journal of Bioscience and Bioengineering, 130(2) 137-141, 2020.04, doi: 10.1016/j.jbiosc.2020.03.010

Chol Gyu Lee, Toshiya Iida, Eriko Kunitomo, Kazuhiro Nakaho, Moriya Ohkuma “Soil prokaryotes associated with changing of pathogen density during anaerobic soil disinfestation” Applied Soil Ecology, 155(-) 103632, 2020.11, doi: 10.1016/j.apsoil.2020.103632

李哲揆「土壌中の有機物由来の炭素循環と、有機物施用による植物病害の抑止に関する微生物の研究」日本土壌肥料学会誌 Japanese journal of Soil Science and Plant Nutrition, 91(5) 335-336, 2020.10, doi: 10.20710/dojo.91.5_335